Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2432 ATGGAGAATCACACCGCCAACAACACCAAAGCAGTTTCAGGAGGAGTCAAACCCATCAATGACAACGAAGAGCTTTCCAATTTGAATGAACAGGAGCACTCAGAAGAAGTGGATGTAGATGAGAATGGAGGCGGGGCTGAAGAAGAAGGGGAGAGAACTGGATCTGGCTCCATCCAGTCTCCTCCTCGCCCACCTTCCAGAACCCCTTTCACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTTGCTCGAACCCTTCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAAGCTGGCAGCTATTTGCATGATGATGGGGATGATTTTGAAGATCTACATGATGGTACTGATGATGATGAGGACAATGGCCCTGATGATGAAGATGATGACAATAATGATGATGAAGAATATGATGATGAAGATGCATTTGATGCGCATGCTCTTGTTAGTTCTGGTGAAATTGATAATACCAGCATTGAATTTGATCCTGATGTATTCTCTAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGGCTATTAGCTTTGGCTGGGATAAATGATCGGGAAGCTGAGGACACAGAAGACCATGGTGCTAATTCTCCGGATGCATGGGAGGATGTTGATCCCGATGAACTTTCATACGAGGAACTTCTGGCATTGGGTGAAGTTGTTGGAACTGAGAGCAGAGGTCTTTCTACTGAAACTATTGCCTCTTTGCGTTCAGTGAACTACAAGATGGGAAGTGATCAGCATGGAAGCAATGATTCGTGTGTCATATGCCGGGTGGATTATGAGGATGGTGAATCCTTAACTGCACTTTCATGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGCGCTGAGGTGTCAGCTTCTGGGAGCAACTTGTAG 990 0.4545 MENHTANNTKAVSGGVKPINDNEELSNLNEQEHSEEVDVDENGGGAEEEGERTGSGSIQSPPRPPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFEDLHDGTDDDEDNGPDDEDDDNNDDEEYDDEDAFDAHALVSSGEIDNTSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDTEDHGANSPDAWEDVDPDELSYEELLALGEVVGTESRGLSTETIASLRSVNYKMGSDQHGSNDSCVICRVDYEDGESLTALSCKHLYHPECINNWLKINKVCPVCSAEVSASGSNL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2432 329 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Prci5g2432 329 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 29 327 IPR043312 -
Prci5g2432 329 MobiDBLite consensus disorder prediction 208 228 - -
Prci5g2432 329 MobiDBLite consensus disorder prediction 101 152 - -
Prci5g2432 329 SUPERFAMILY RING/U-box 269 323 - -
Prci5g2432 329 MobiDBLite consensus disorder prediction 122 152 - -
Prci5g2432 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 325 IPR013083 -
Prci5g2432 329 MobiDBLite consensus disorder prediction 208 224 - -
Prci5g2432 329 MobiDBLite consensus disorder prediction 1 75 - -
Prci5g2432 329 SMART ring_2 278 318 IPR001841 -
Prci5g2432 329 MobiDBLite consensus disorder prediction 1 25 - -
Prci5g2432 329 FunFam E3 ubiquitin ligase BIG BROTHER-related 244 325 - -
Prci5g2432 329 Pfam Ring finger domain 276 318 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2432 Prci-Chr5 40983377 40987749 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2432 51 216 C3H Transcription Factor Family AT3G19910 46.524 4.11e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2432 K19045 - gmx:100306465 415.231