Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2430 ATGTCTTCCTCCGGTGGAAGCGACCACGACGGCGGAACAAAAGTTTTTTTCTGCTACAAATGCGATCGCAGAGTCCATATTCCCGTCTCCGATTCTTCCGACCCTTTCTGTCCGTTCTGTTTGCAAGGCTTTCTTGAAGAAGTCGAAAACCCTAACCCTAACCCTTTTGCGGACCCAGAGCCCTCTTTTGGCTTTGATCCTTTATCCTTCCTCCCCTCCTCTTGTCCTGCTTCTCGCACCAGAATTCGACCTGATTCCGTAGATTCCGACATATTCGACCCTGTTCATTTTCTCCAGAGCCACCTTCGAGATCTTCAGGCTGATGGCGCGAACGTCCAATTTGAGATCAATCATCCTTCTGAACAAGCGTTTCGGCTACCCACAAACATTGGTGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAACTCGCGGAGAACGACCCAAACCGCTATGGCACCCCACCTGCTTCGAAATCTGCCGTACAGAATCTTCCAGCTGTTACTGTCACCGATGAATTGTTGAACTCGGAAATGAACCAGTGTGCGGTGTGTCAGGATGAGTTCGAGAAGGGTACCCAGGTAAAGCAAATGCCTTGCAAGCATGTCTATCATGATGGGTGCTTGCTGCCGTGGCTGGAATTGCATAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACCGATGACCCCGATTATGAGAACCCAACCCACAGGGCCCAGGGGAATGCTAATACGGGGTGGAGATCTGTTGGAAGTGCCAGCAGCAGCGGAGCGGGTAGCAGACCTGTCCAGAGGACTTTTAGGATATCATTGCGTTATCCTTTTGGCTCACGTGAGTCTACTCAAGAGAGTAGCGAGCGAGGATGGGGAAATATGCAAGAAGATTTAGATTGA 903 0.5028 MSSSGGSDHDGGTKVFFCYKCDRRVHIPVSDSSDPFCPFCLQGFLEEVENPNPNPFADPEPSFGFDPLSFLPSSCPXASRTRIRPDSVDSDIFDPVHFLQSHLRDLQADGANVQFEINHPSEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVQNLPAVTVTDELLNSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDPDYENPTHRAQGNANTGWRSVGSASSSGAGSRPVQRTFRISLRYPFGSRESTQESSERGWGNMQEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2430 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 232 IPR013083 -
Prci5g2430 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 230 - -
Prci5g2430 301 SMART ring_2 185 225 IPR001841 -
Prci5g2430 301 Pfam Ring finger domain 183 226 IPR001841 -
Prci5g2430 301 SUPERFAMILY RING/U-box 164 235 - -
Prci5g2430 301 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Prci5g2430 301 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Prci5g2430 301 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Prci5g2430 301 MobiDBLite consensus disorder prediction 241 267 - -
Prci5g2430 301 MobiDBLite consensus disorder prediction 230 301 - -
Prci5g2430 301 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2430 Prci-Chr5 40960430 40964550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2430 129 237 C3H Transcription Factor Family AT5G01980 49.541 4.54e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2430 K11982 - gmx:100785289 340.887