Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2418 ATGGCCGAGTCGCCCTCTCCGACGCCTGAGCAGCCCTTGCCGGAATCCGATGATTCGCAGTACTGGTGCTACCACTGCGACAAGCGTGTGTCAGTAGAAACGCATCCTGAGGGCGCTGACATTCTCTGCCGCGAGTGCAAGCGTGGTTTCGTCGAATCGATTCCTTCGCCGTCGTTGGCTACGCCCTCTGCGACTTCTGATCTGATCGACGATCCTCATTTTGAATCGCAGTTTTTGCGAGTGCTTCGGCTACTTGCAGAGTCAGCGCGTGATGAAGATGGGCCTCCTCCTCCGTCTCGGAACCTCTCCTCAGGCGATGATTTTCTCAGGGTTGAGCTCGAGGATTGGGATGACGATGAAGAAAGCAACAACAACAATAACAACGACGAGGACGAAGAAGATGATGGGGTGGAGTTTCACGATGAAGGAGAAGAGCACGAAGGTGCCGAAGAGCATGAAGATCGGCTGGGAGAAGAGGACCCAAGTGGAGACGAAGTCGAAGAAGATCTGCGAAGGAGGAGCATGCGTAACCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCAACCGGCACAAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAACTGAGACTTCAAGTGCCTGATTCGGATCGATTTTTTGGGAACCCGGGAGATTATGTTGATGCTGCTGATTATGAAGCTCTGCTGCTGACCTTGGCAGAAAGCGATGGAAGTGGGAGAAGAGGAGCCCCACCGGCAGCAAAATCTGCGGTGGAGTCGCTGCCGACGGTGGAGATTGTGTCAGAGGATCAAGTTTTGGTGTGCGCGATATGTAAAGATATGGTGGGCGTGGGAAGCATGGCAAAGCGATTGCTCTGTGGACATCAGTACCATGGGGATTGCATAGTGCCTTGGCTGGGCTCCAGAAATTCATGCCCGGTATGCAGATTTGAGCTTCCAACGGATGACCTGGATTATGAGGAGGAAAAGAAGAAGAAGGTGATTGCCACTACCGTTAATGGGGCATCGGGTTCTGGTGGGACTGATGCGGTATCGGGTTGA 1086 0.5285 MAESPSPTPEQPLPESDDSQYWCYHCDKRVSVETHPEGADILCRECKRGFVESIPSPSLATPSATSDLIDDPHFESQFLRVLRLLAESARDEDGPPPPSRNLSSGDDFLRVELEDWDDDEESNNNNNNDEDEEDDGVEFHDEGEEHEGAEEHEDRLGEEDPSGDEVEEDLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLLTLAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQVLVCAICKDMVGVGSMAKRLLCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDLDYEEEKKKKVIATTVNGASGSGGTDAVSG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2418 361 MobiDBLite consensus disorder prediction 142 156 - -
Prci5g2418 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 330 IPR013083 -
Prci5g2418 361 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Prci5g2418 361 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Prci5g2418 361 SMART ring_2 283 323 IPR001841 -
Prci5g2418 361 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Prci5g2418 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 328 - -
Prci5g2418 361 SUPERFAMILY RING/U-box 277 330 - -
Prci5g2418 361 MobiDBLite consensus disorder prediction 115 172 - -
Prci5g2418 361 MobiDBLite consensus disorder prediction 115 141 - -
Prci5g2418 361 Pfam Zinc finger, C3HC4 type (RING finger) 283 323 - -
Prci5g2418 361 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2418 Prci-Chr5 40892094 40893530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2418 194 342 C3H Transcription Factor Family AT5G01980 47.771 8.70e-35 131