Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2405 ATGACTGTGGATGAAGTGGGTAGTAGCTCTGTGTGGAGCAGAGAGCAAGATAAAGCATTTGAAAATGCCCTAGCAACTCATCCTGAAGATGCATCAGATCGATGGGAGAAGATTGCAGCTGATGTACCAGGGAAAACTGTAGAAGAGATTAAACTTCACTATGAGCTCTTGGTTGAGGATCTTAACCAGATCGAATCTGGTTGTGTGCCTATACCTTCTTATAATTCTTCTTCAGAGGGGTCAACCAGCCATGCTAGTGATGAAGGCTTGGCCAAGAAGGGTTCTGGGCATTATAACAGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGGCGAAAGGGTATTGCTTGGACAGAAGACGAACACAGGCTATTTCTTCTTGGCTTGGAGAAGTATGGAAAAGGTGACTGGCGAAGTATATCTAGGCACTTTGTGGTGACTAGAACGCCCACTCAAGTAGCAAGCCATGCTCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGAAGATCCAGTATACATGATATCACCAGTGTGAACAACGGAGACATTTCAGCTCCTCAAGGACCCATCACTGGTCAAACAAATGGTTCTTCTACATCCAATGCTGCTGGGAAGTCAACCAAACAAGCCCCTCAAACTCCAAACGGACCTCCTGGTGTAGGAATATATGGTACTCCAACTATTGGGCAACCTATAGGAGGACCCCTTGTCTCTGCAGTGGGCACCCCAGTAAATCTTCCTGGACCAGCACACATGGCATATGGGGTCCGAGCACCAGTGTCCGGCACAGTTGTTCCCGGTGCCCCAATGAACATGGGTCCAATGCCATACCCTATGCCACACACATCTGCTCATAGGTGA 885 0.4655 MTVDEVGSSSVWSREQDKAFENALATHPEDASDRWEKIAADVPGKTVEEIKLHYELLVEDLNQIESGCVPIPSYNSSSEGSTSHASDEGLAKKGSGHYNSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRHFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSSTSNAAGKSTKQAPQTPNGPPGVGIYGTPTIGQPIGGPLVSAVGTPVNLPGPAHMAYGVRAPVSGTVVPGAPMNMGPMPYPMPHTSAHR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2405 294 SUPERFAMILY Homeodomain-like 115 170 IPR009057 -
Prci5g2405 294 Pfam Myb-like DNA-binding domain 120 165 IPR001005 -
Prci5g2405 294 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Prci5g2405 294 FunFam Transcription factor SRM1 4 71 - -
Prci5g2405 294 PANTHER TRANSCRIPTION FACTOR KUA1 8 290 - -
Prci5g2405 294 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Prci5g2405 294 ProSiteProfiles Myb-like domain profile. 113 165 IPR001005 -
Prci5g2405 294 Gene3D - 4 71 - -
Prci5g2405 294 CDD SANT 12 58 IPR001005 -
Prci5g2405 294 Gene3D - 119 171 - -
Prci5g2405 294 ProSiteProfiles SANT domain profile. 121 169 IPR017884 -
Prci5g2405 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 169 IPR017930 -
Prci5g2405 294 MobiDBLite consensus disorder prediction 74 117 - -
Prci5g2405 294 MobiDBLite consensus disorder prediction 175 230 - -
Prci5g2405 294 CDD SANT 120 165 IPR001005 -
Prci5g2405 294 SMART sant 117 167 IPR001005 -
Prci5g2405 294 SMART sant 8 60 IPR001005 -
Prci5g2405 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 167 IPR006447 GO:0003677
Prci5g2405 294 FunFam transcription factor MYB1R1 119 170 - -
Prci5g2405 294 MobiDBLite consensus disorder prediction 182 222 - -
Prci5g2405 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Prci5g2405 294 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2405 Prci-Chr5 40828119 40837611 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g2405 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2405 - - cave:132184506 504.212