Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2395 ATGCAGGAACCTGACTTCATTGGTGCTCAGAAAAGGCATTCAGATTTCATGGCTCAGCTAGAGTTCATATGTATTAGTTCATCAGATGATGACTTGGAGCTGGAGGAGATAGAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCTGCTCATGAAAGCAATGCTGGTTATGGTGGAGGGCTTGTGCTTGATAATTCTTTGAGATGGGCAAATACTTCAAATGCAAGCTCTTCTAGTGTTTATAATCACTATACTGAACCTGGGTCCAGCAGTTATATGCCAAACATGCATGGAGATGGATCTTTCAATTTTTTGAAGAATGGAAACACAAGTCAGTTTCAGACAGTAAATTCCCGAATTGCTAAATCTTCTGATGCTGATTATGAGAAAATACCATTCCAACAAGCTTTGAAGAGGACCTTTTCATCATCGCCTCAGCCAGCTGCAACAAAGCCACTTCCATCTCTTCAGTCATTTGCACCTGGAAGTAATACGAACAGTGACAAGGGCGCTTTGCGTGATAACTATGGCAGGGGCAATGATGAACGCATGATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCACCTATGATTCATGGAAAGTCTATCTCTAACACAGTGTTAGCTAGCTCAAGTGAGCTGTTTCGTACTGGGGCAGAAGAAAGGGCTTCAGAAAATGATGAGAGACTAATTTATCAGGCAGCACTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCACTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAGAAGCTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCATTGCAGTCAAAATCGAAAGCAGATGAGATGTGCAATCATAAAGCTGAAGCATTAAATTTGGATGAGGATGATGAAAATGATAATGCTGGTGGTACTGTGGAAAAATCTAAAAAGAATGAAGATGATATAAAGCCTGTTCCTGAATCAGTTAGTTCATCTTCAACAAGGGTGCTTGGCAGGAAAAGACCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACGAAGGATCCTGTTGAACTTGCAAAATATGATGTCGTCCTCACAACATATTCTATTGTAACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAAATTTGGGTTGTCCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTAATAATGCAAATAAAAAGTGTAAAAAAGGTAAAAAGGGAATTGACAGTTCTTTTGATTGTGCATCTGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGTCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAACGCTATTGAAGATCTCTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCAGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACACTGATTGATGGACAGCCTATAATCACTTTGCCCCCTAAAACTATTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTACTCAATTTAAGGCATACGCTGCTGCTGGTACAGTCAATCAAAATTATGCAAACATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGCAACCACCCACGTCTTGTTAAAGATTATAGTTCTGATTTCGTCGGGGAAAGTTCGATAGAAATGGCGAGAACACTTCCAAGGGAGATGCTACTTAATCTTTTCAATTGTTTGGAAACATCCTTTGCAATTTGCAAAGTTTGCAATGATACGCCTGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAAAATATGTGCCCAGCTGCTGATTGTAGAGAACAAATTGGTGATGATGTCATCTTCTCCAAAGCTACATTAAGAAGTTGCATCTCTGGTGATCTTGGTGATAGCAGTTCCTCAAATTCTCGACTCATTGATTATTCAGTCGTGCAGCAGAGTAATTACAGTTCATCTAAAATCAAGGCACTCCTCGAGATTCTGGAGCTACATTTGAGTCCCTCTGGTCGTTCTAGAAATTCACTGCCTTCTGAAACTTCAGATGTTGACAACTTGGATTCAGATGTGATTATTACAAGGCACACAAGAAAATATTCAGAGAGCACAACTGACGGACCAATGAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGCTGAAGATTCACTGAAGGACTCTGGTATTCGATACAGGAGACTTGATGGTACCATGACGTTGGCCGCAAGGGACAAGTCTGTTAAAGATTTCAACACTGATCCTGAGGTAACTGTCATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAACTTGGTTGCTGCTTGTCATGTCGTTCTTTTAGATCTTTGGTGGAATCCAACAACTGAAGACCAAGCTGTTGATCGAGCTCACAGGATTGGACAGACGCGTCCTGTTACTGTGACACGGCTCACTATAAGAGATACGGTTGAAGATAGAATCTTGGCTCTCCAGGAAGACAAGAGAAAAATGGTGGCGTCTGCTTTTGGTGAAGATCAAGCTGGCGGGACGGCAACTCGCCTGACAGTGGATGACCTAAAATATCTTTTCATGGTCTGA 3006 0.4145 MQEPDFIGAQKRHSDFMAQLEFICISSSDDDLELEEIENPNYGNRSGWPAHESNAGYGGGLVLDNSLRWANTSNASSSSVYNHYTEPGSSSYMPNMHGDGSFNFLKNGNTSQFQTVNSRIAKSSDADYEKIPFQQALKRTFSSSPQPAATKPLPSLQSFAPGSNTNSDKGALRDNYGRGNDERMMYQNGGIRILPPPMIHGKSISNTVLASSSEXLFRTGAEERASENDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMLQRETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKADEMCNHKAEALNLDEDDENDNAGGTVEKSKKNEDDIKPVPESVSSSSTRVLGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKMGEKFGLSSEFAFGKKRKKANNANKKCKKGKKGIDSSFDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIITLPPKTIQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACNHPRLVKDYSSDFVGESSIEMARTLPREMLLNLFNCLETSFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCREQIGDDVIFSKATLRSCISGDLGDSSSSNSRLIDYSVVQQSNYSSSKIKALLEILELHLSPSGRSRNSLPSETSDVDNLDSDVIITRHTRKYSESTTDGPMKAIVFSQWTSMLDLAEDSLKDSGIRYRRLDGTMTLAARDKSVKDFNTDPEVTVMLMSLKAGNLGLNLVAACHVVLLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2395 1002 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 552 IPR014001 -
Prci5g2395 1002 CDD DEXDc_SHPRH-like 259 590 - -
Prci5g2395 1002 CDD SF2_C_SNF 792 954 - -
Prci5g2395 1002 MobiDBLite consensus disorder prediction 321 363 - -
Prci5g2395 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 1001 IPR027417 -
Prci5g2395 1002 MobiDBLite consensus disorder prediction 335 351 - -
Prci5g2395 1002 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 98 1001 - -
Prci5g2395 1002 ProSitePatterns Zinc finger RING-type signature. 721 730 IPR017907 -
Prci5g2395 1002 Pfam Zinc finger, C3HC4 type (RING finger) 705 750 - -
Prci5g2395 1002 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 831 997 IPR001650 -
Prci5g2395 1002 Gene3D - 605 1001 IPR027417 -
Prci5g2395 1002 Pfam Helicase conserved C-terminal domain 847 944 IPR001650 -
Prci5g2395 1002 Pfam SNF2-related domain 262 668 IPR000330 GO:0005524|GO:0140658
Prci5g2395 1002 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 471 602 - -
Prci5g2395 1002 SMART ring_2 706 744 IPR001841 -
Prci5g2395 1002 Gene3D - 459 601 IPR038718 -
Prci5g2395 1002 Gene3D - 231 318 IPR038718 -
Prci5g2395 1002 MobiDBLite consensus disorder prediction 137 183 - -
Prci5g2395 1002 ProSiteProfiles Zinc finger RING-type profile. 706 742 IPR001841 -
Prci5g2395 1002 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 353 442 - -
Prci5g2395 1002 SMART helicmild6 861 944 IPR001650 -
Prci5g2395 1002 SMART ultradead3 255 569 IPR014001 -
Prci5g2395 1002 MobiDBLite consensus disorder prediction 137 171 - -
Prci5g2395 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 590 IPR027417 -
Prci5g2395 1002 SUPERFAMILY RING/U-box 702 761 - -
Prci5g2395 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 756 IPR013083 -
Prci5g2395 1002 Gene3D - 356 445 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2395 Prci-Chr5 40759948 40769609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2395 116 902 RAD5 or RAD16-like Gene Family AT1G50410 60.945 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci5g2395 SNF2_N 1.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2395 - - gmx:100795142 1327