Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2394 ATGCTCCACAATTTGGATCATGTCCATGAATTCCTCAACTCAGCTTGGAGAGTTTGTTCTCTTGTAGGTGGTTGGGTTTCTAGCTTAATATCACAACCCTATAGAGACTTGGAAAGAGGAGGTTATTTAGATTTCATGGCTCAACTGGACTCTGTATATATTATTTCATCGGATGATGACCAGGAGCTGGAGGAGACAGAAACCTCTAACTATAGGAACCTCCCAAGATGGGCTGCTGGAGGAAGTAATGCTGGCTATGGTGGAGGGCTTAAGCAGGGTAGTTCTTCTAAATGGGAAAATAATTCTTCGAATGCAAGCTCTTCAGGAGCTTATAGTCATTCACAGGTCAAGCACAGCGCTAAACCTTGGTCCAGCAACAATATGTCGAATCGCAGAGTAGCACAAAGAGATGAGTCTTTCAATTCTTTAGAGAATGGAAAAACAAACCAGCATCAGACAGTTGTTTCACAAATTGCTAATGCTGGTGCTGATTATGGAAAAATGCCATGCCAACAAGCATCAAAGAGGATGCTTCCGTCATATCTTCAGCCATCTACTGAAAAGCCTCTTCCATCTCTCAAGTCATTTTCACCAGATACTCGGTCGAACAGTTTAAAAGATAACATGAGCAGTAGCCAGATTCATGATACCCATGGAAATCATCGTAATGGGGCAAGTAGGATTCTTCCTCCAACTTTGATGCACGGAAGAAACACCTCTGTTTTGCAGTTGCCTAGTTCGAGTGAATCTACATATCATTCTGGAGCAGGCGAAGGAAGGGCTGCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTACTTTACCTGATGGTTTATTGTCTGTATCACTTTTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAAACAGAAGTTTGCATTGTTTGGGAGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATTGCCCTCATACAAATGCAGAGATCATTTCAGTCAAAATCAAAAACAGATGAGATGTGCAATCATAAAGCTGAAGCATTTAATTTGGATGAGGATGATGACAATGATAAGTGCGATTGTACTGTAGAACACTCTAAAAAGAATGAAGAAGTTGATGGTTTAAAACCTTCTAAATCAGTTAGTTCATCTTCAAGAGAGGTGCTTGGGAGGAAAAGACCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAACTGGAAGACAAAGTTGGAGATGAAGCTAAGCTCTCTGTGTTGGTTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCTAATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGACGAAAAAAATGAAGAAAAATTTTGGTTATCCTCTGAGTTTTCTTTTGGTAAAAAGAGGAAAAAGACTCATAACGGAAGTAAAAAGAATAAAAAGGGTAAAAAGGGGATTGACAGTTCCTTTGATTGTGCTTCTGGCCCTCTAGCACAAGTGGGTTGGTTCAGGGTTATTCTAGATGAAGCTCAAATGATAAAGAATCATAGGACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACACCAATTCAAAATACTGTAGATGATTTGTATAGCTACTTCAGATTCTTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCAATATCCAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCTGTTTTGAGGGCTATAATGCTGCGTCGTACAAAAGGAACATTGATCGATGGGGAGCCTATAGTTAATTTGCCCCCTAAAACAGTTCAGCTGAATAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGAACTCAATTTAAGGCATACGCTGCTGCTGGTACAGTCAATCAAAACTATGCAAACATTCTTTTAATGCTTTTACGCCTTCGTCAAGCTTGTGACCACCCATTTCTTGTTAAAGATCATTGTTCTGATGTTGTTGGGGGAAATTCAGTTGAAATGGCAAAAATGCTTCCAAGGGAGATGCTGATTAACCTCTTTAATTGCTTGGAAACCTCCTTTGCCATATGTGGTGTTTGCAGTGATCCACCTGAAAATCCAGTTGTTACTATGTGTGGTCATGTTTTCTGTTATCAGTGTGTATCAGAATATTTGACAGGTTACCAGAATATCTGCCCTGCAGTTGATTGCAAAGAAAAAATCGGTGATGACGTTGTTTTCTCCAAATCTACTTTAAGAAGCGGCATATCTGGTGGCCTTGGTGATGCTAGTTCTGCAAGTTATCATCATGTTGATTATTCAGTAGTACAGCAGGGAAATTACAGTTCATCTAAAATCAAAGCAGTCCTTGAGATTCTGCAGTTATATTGTAAAGTAAAGAATCCAGGTTCTGACCAACCGAGTTCCTCAGGATGCAGTAGAAATTCATCTTCTGAAACTTCAGATGATGAAGATTTCTATTCAGAAGTTAGTCCTACAAAACATTCAAGAAAATATTCAGAGTGCTCAACTGAAGGGCCAATAAAAGCTATTGTATTTTCCCAGTGGACTGGCATGTTGGACTTAGTTGAACGTGCACTGGAAGAATTCTCTATTCCGTACAGGAGACTTGATGGAACCATGACGCTGGTTGCAAGAGATAAAGCTGTTAAGGATTTCACTGCTAATCCTAAGGTAATTGTCATGCTGATGTCTTTAAAAGCAGGAAACCTTGGTTTAAACATGGCTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACACGGCTCACCATAAAAGATACAGTTGAGGATAGAATATTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAGGCGGGGGTTCTGCAGCTCGCCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3147 0.4061 MLHNLDHVHEFLNSAWRVCSLVGGWVSSLISQPYRDLERGGYLDFMAQLDSVYIISSDDDQELEETETSNYRNLPRWAAGGSNAGYGGGLKQGSSSKWENNSSNASSSGAYSHSQVKHSAKPWSSNNMSNRRVAQRDESFNSLENGKTNQHQTVVSQIANAGADYGKMPCQQASKRMLPSYLQPSTEKPLPSLKSFSPDTRSNSLKDNMSSSQIHDTHGNHRNGASRILPPTLMHGRNTSVLQLPSSSESTYHSGAGEGRAAETDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSFQSKSKTDEMCNHKAEAFNLDEDDDNDKCDCTVEHSKKNEEVDGLKPSKSVSSSSREVLGRKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLVYHGGNRTKDPVELANYDVVLTTYSIVTTEVPKQPLVEEDEIDEKNEEKFWLSSEFSFGKKRKKTHNGSKKNKKGKKGIXDSSFDCASGPLAQVGWFRVILDEAQMIKNHRTQVARACCSLRAKRRWCLSGTPIQNTVDDLYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPPKTVQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPFLVKDHCSDVVGGNSVEMAKMLPREMLINLFNCLETSFAICGVCSDPPENPVVTMCGHVFCYQCVSEYLTGYQNICPAVDCKEKIGDDVVFSKSTLRSGISGGLGDASSASYHHVDYSVVQQGNYSSSKIKAVLEILQLYCKVKNPGSDQPSSSGCSRNSSSETSDDEDFYSEVSPTKHSRKYSECSTEGPIKAIVFSQWTGMLDLVERALEEFSIPYRRLDGTMTLVARDKAVKDFTANPKVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGGSAARLTVDDLKYLFMV 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2394 1049 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1048 - -
Prci5g2394 1049 Gene3D - 391 487 IPR038718 -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 853 876 - -
Prci5g2394 1049 CDD DEXDc_SHPRH-like 295 628 - -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 236 254 - -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 85 155 - -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 176 259 - -
Prci5g2394 1049 ProSiteProfiles Zinc finger RING-type profile. 744 780 IPR001841 -
Prci5g2394 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 590 IPR014001 -
Prci5g2394 1049 Pfam SNF2-related domain 298 705 IPR000330 GO:0005524|GO:0140658
Prci5g2394 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 1048 IPR027417 -
Prci5g2394 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 628 IPR027417 -
Prci5g2394 1049 SUPERFAMILY RING/U-box 740 788 - -
Prci5g2394 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 820 IPR013083 -
Prci5g2394 1049 CDD SF2_C_SNF 892 1001 - -
Prci5g2394 1049 SMART helicmild6 908 991 IPR001650 -
Prci5g2394 1049 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 508 640 - -
Prci5g2394 1049 Gene3D - 488 639 IPR038718 -
Prci5g2394 1049 Gene3D - 268 354 IPR038718 -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 176 219 - -
Prci5g2394 1049 Pfam Helicase conserved C-terminal domain 893 991 IPR001650 -
Prci5g2394 1049 SMART ultradead3 291 607 IPR014001 -
Prci5g2394 1049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 881 1044 IPR001650 -
Prci5g2394 1049 SMART ring_2 744 782 IPR001841 -
Prci5g2394 1049 MobiDBLite consensus disorder prediction 88 155 - -
Prci5g2394 1049 Pfam Zinc finger, C3HC4 type (RING finger) 744 780 - -
Prci5g2394 1049 ProSitePatterns Zinc finger RING-type signature. 759 768 IPR017907 -
Prci5g2394 1049 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 390 479 - -
Prci5g2394 1049 Gene3D - 643 1048 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2394 Prci-Chr5 40748861 40757228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2394 49 949 RAD5 or RAD16-like Gene Family AT1G50410 55.131 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci5g2394 SNF2_N 1.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2394 - - gmx:100795142 1312.36