Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2393 ATGGCGGGGGGAAAATCAACTAGGTCGAACCCTTCACAGGCCAGAAAGAGAGTCGATGCTGTCGATTCTAGGGCTGCCACTGGTCTTGTCCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGCGAAGAGTGCAACAAGAATGTCCCAGTGGCCCTCATTAGCATGCATAGTTGCAGCCTTGAGGCTAAAATTAAAATGAATCTGGAGGCTCAGGTTGTGGAAAAGCCTGCTGAGGTCAAGAAGCCAGTGGAGAGGAAGAAGCCTAAATCAAGTGAGCCTAAGGCAAAAAAGGCCAAGGTGGAGAAGGGAAAGAAGGGCAAGGATCCAAACAAACCCAAGCGTCCTCCTACAGCCTTCTTTGTCTTCCTGGAAGAGTTCAGAAAATCTTTCAAGGAAGCAAATCCTGATTCCAATGATGTCAAGAGGGTTGGTAAGGAGGCAGGTGAGAAGTGGAAGTCCTTATCTGATGAGGAGAAGAAGCCTTACATGGATAGAGCTGCTGAGCTCAAGGCCGAATATGAGAAAGCTTTGGAAAGTTATAATGCTGCAGAAGACGGAGCTGAACAAGAGGGATCTGATAGGGAAGATGCGGCTGAGGAAGGGGGTCAAGAGGAGTCTGGGAAGGATGACGCAGCAAAGGAAAATGAAGAGCTCACTGATGAGGAGTAG 669 0.4888 MAGGKSTRSNPSQARKRVDAVDSRAATGLVRAKDGSAFAKCEECNKNVPVALISMHSCSLEAKIKMNLEAQVVEKPAEVKKPVERKKPKSSEPKAKKAKVEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSNDVKRVGKEAGEKWKSLSDEEKKPYMDRAAELKAEYEKALESYNAAEDGAEQEGSDREDAAEEGGQEESGKDDAAKENEELTDEE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2393 222 SUPERFAMILY HMG-box 99 181 IPR036910 -
Prci5g2393 222 MobiDBLite consensus disorder prediction 177 222 - -
Prci5g2393 222 MobiDBLite consensus disorder prediction 73 118 - -
Prci5g2393 222 MobiDBLite consensus disorder prediction 189 203 - -
Prci5g2393 222 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 112 181 IPR009071 -
Prci5g2393 222 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 205 - -
Prci5g2393 222 MobiDBLite consensus disorder prediction 1 24 - -
Prci5g2393 222 Coils Coil 163 190 - -
Prci5g2393 222 CDD HMG-box_AtHMGB1-like 113 173 - -
Prci5g2393 222 Gene3D High mobility group box domain 94 194 IPR036910 -
Prci5g2393 222 SMART hmgende2 111 182 IPR009071 -
Prci5g2393 222 Pfam HMG (high mobility group) box 112 181 IPR009071 -
Prci5g2393 222 MobiDBLite consensus disorder prediction 74 112 - -
Prci5g2393 222 MobiDBLite consensus disorder prediction 133 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2393 Prci-Chr5 40725012 40727072 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci5g2393 HMG_box 1.7e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2393 K25507 - gmx:100306558 237.269