Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2387 ATGCTAGACAATAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGCGATCCTTCCCAAAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCTGAGGTCGTGTGTTTGTCACCGAAGACCTTGTTGGAATCAGATAGATATGTGTGTGAGATCTGTAATCAAGGATTTCAAAGAGACCAGAATCTGCAGATGCACAGAAGAAGGCACAAGGTACCCTGGAAGTTGCTGAAAAGGGAGACTAGCAGCACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATCAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCGTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGACGCGTGCACTGGTCGAACAGCTTCTAGCACTAGTCCATCTAGTGAAGCCAATTTAGTTTCATTAATGCAAGGCTTGCCTGTGCCAAAACCACCCACTTCTCATAGACATAATAACTTAGAAGAACTCCAGCTCTTACGTTGTTCTTCTTCATCAGACGCTCTAGGAAACCGAGGCTCTGATCATGAGGAGGATAACAACCACGAAACTGATCAAACCCATCTGAAGCTTTCAATAGGGTCATTCAGTAACAACAATAAGAGCAACAAGAATGTTGCGAGTAATAATGAAGCGGAAGCGGAAGAAGCACCGAGGTTAAGGGAAGTGGGGCGGTTGAAAGAGTGCGCTAGTGAAGAGCTCAAGTTGGCGATGGCTGAAAAGGCATATGCAGAAGAAGCTAGAAGAGAGGCTAAGCGTGAGATAGAGATGGCCGAGTTAGAGTTTGGGAGAGCAAAGAGGATAAGGAAGGAAGCTCAGGAGGAGCTCGAGAAGGCTGAGGCTTTGAAGAAGCAAGCCATGATGAAGACGAGTTCCACTCTGATGCAAATTACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTCTTGCCGTTTCATCAGAAGAGACATCTCTTGTGATGAGCTGCATGTCCTCACCCACCACTGAAGGAGAAGGAGATCAATAA 1200 0.4608 MLDNSANSSDAASSENNGAILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETSSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTGRTASSTSPSSEANLVSLMQGLPVPKPPTSHRHNNLEELQLLRCSSSSDALGNRGSDHEEDNNHETDQTHLKLSIGSFSNNNKSNKNVASNNEAEAEEAPRLREVGRLKECASEELKLAMAEKAYAEEARREAKREIEMAELEFGRAKRIRKEAQEELEKAEALKKQAMMKTSSTLMQITCQACKQQFQSSILAGXSSEETSLVMSCMSSPTTEGEGDQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2387 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Prci5g2387 400 MobiDBLite consensus disorder prediction 1 37 - -
Prci5g2387 400 MobiDBLite consensus disorder prediction 182 282 - -
Prci5g2387 400 MobiDBLite consensus disorder prediction 182 198 - -
Prci5g2387 400 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Prci5g2387 400 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Prci5g2387 400 SMART c2h2final6 52 74 IPR013087 -
Prci5g2387 400 SMART c2h2final6 96 126 IPR013087 -
Prci5g2387 400 SMART c2h2final6 132 159 IPR013087 -
Prci5g2387 400 MobiDBLite consensus disorder prediction 234 249 - -
Prci5g2387 400 FunFam protein indeterminate-domain 12-like 31 102 - -
Prci5g2387 400 Gene3D Classic Zinc Finger 117 195 - -
Prci5g2387 400 Coils Coil 297 352 - -
Prci5g2387 400 Gene3D Classic Zinc Finger 30 100 - -
Prci5g2387 400 MobiDBLite consensus disorder prediction 1 16 - -
Prci5g2387 400 MobiDBLite consensus disorder prediction 250 273 - -
Prci5g2387 400 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 366 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2387 Prci-Chr5 40663011 40665815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2387 23 397 C2H2 Transcription Factor Family AT2G01940 57.037 3.32e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci5g2387 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2387 K25871 - qsa:O6P43_032402 471.855