Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2352 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCAAAGGTGTGGTGTTACTATTGTGATCGGGAGTTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAGGCTAAGCACTTCAAATGCCATGTCTGCCACAAGAAACTCTCCACTGCCGGCGGCATGGCCATTCACGTGCTTCAGGTTCACAAAGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCTACAGATATTGAAATATATGGGATGCAAGGGATTCCGCCAGATATCTTGGCCGCCCACTACGGAGATGATGAGGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAACTCAGCTTGTAGGTGGTGTTGTCCCAGCACCATTAGGCATGGGATATCCTCAGTCAACCTTGGGTACTATGCCACCTATTTATAATCCAGCGGTACCTGTGCCTCCTGCCACTTGGTCAGTTCCACCTCGACCTCAGCCTTGGTATCCGCAACCTCCATCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTCCAGAATGTGAGGCCACCTCTACCATCAACTGCTTCTCCTGCCCTTCCAACTTCTCAAGTTGCTCCTCCTGGATTGCCTCCAACATCTGCTCCAGTTTCACAACCATTGTTTCCTGTTGTTGGAAATAACCATACGATGGCCCAAAGTTCAACATTTTCTGCACCATCACTTTCTACCACTGTTCCATCTTCATTGCCTTCAAGTACCTCTGCTGATGCTTATTCCAGTGCTAACACAACTTCGACAAATAATTATCAAACACTAGGGGTTCCAGGAGGGACATCAAGCAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGACCTTCAATTGGACCACCCCCAGTAATTGCAAACAAAGCTCCTGCGACTCAACCAGCCACTAATGAGGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCTAAAATACCAGGTGCATGATGAAACTAGCCAGGTAAGTCATACTACCTCTGTAATAGAAGGAGTTGCTTTCACATCTAACCAGATGGGTAGGCTTTATGCTTCTTGCTTTCAGATTCAGTTGTTTACGCATTGTTTGCTATTGATAGAGGTACATTCTGTATAA 1167 0.4627 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGDDEDEAPSKAAKVDIPSTQLVGGVVPAPLGMGYPQSTLGTMPPIYNPAVPVPPATWSVPPRPQPWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTASPALPTSQVAPPGLPPTSAPVSQPLFPVVGNNHTMAQSSTFSAPSLSTTVPSSLPSSTSADAYSSANTTSTNNYQTLGVPGGTSSNSHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLLKYQVHDETSQVSHTTSVIEGVAFTSNQMGRLYASCFQIQLFTHCLLLIEVHSV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2352 388 PANTHER ZINC FINGER PROTEIN 207 1 351 - -
Prci5g2352 388 MobiDBLite consensus disorder prediction 234 308 - -
Prci5g2352 388 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Prci5g2352 388 MobiDBLite consensus disorder prediction 188 213 - -
Prci5g2352 388 SMART c2h2final6 12 35 IPR013087 -
Prci5g2352 388 SMART c2h2final6 36 59 IPR013087 -
Prci5g2352 388 MobiDBLite consensus disorder prediction 234 291 - -
Prci5g2352 388 CDD SUF4-like 13 92 - -
Prci5g2352 388 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Prci5g2352 388 Gene3D Classic Zinc Finger 1 66 - -
Prci5g2352 388 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2352 Prci-Chr5 40404245 40411082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2352 1 367 C2H2 Transcription Factor Family AT1G30970 63.144 9.42e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci5g2352 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2352 - - gsj:114413692 573.933