Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2311 ATGTCCAAATATTTTCCTCTTTGTTATACTCTGACACTCTGGCCTCCCTCCAATATCCTTCTCTGCTTCCCATTGAGAGCGAGCGAGCGGGATACAGTGTGTCAGAGGCTGTTTTTTCCTTACATGGCGATAGCCAGAGAGATGGAGGACGAAGGAGAGGTTCGGAACAACGCTGGAAAGAGGCTGAAATGCATGAAGAATGAGGAAAAGGATCAAACAGAGGAGGGAGCTGCGGAGGATGAAAGTGAGCTTCCTCTCAAGCCTGGCCTCTTCTACTACCCAACCACTCCTACGTCTTTCGTTGTCTCCGATGCTCTCGAACCCGATTTTCCCATTATCTATGTCAACAAAGTCTTTGAATTCGTCACCGGCTATCGTGCCGATGAGGTTTTGGGTCGGAACTGTCGGTTCTTACAGTATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGCATTCCTTTAGTGAACAGGCTGAGGCTTTCTCCGATTCACGATGATGATGGAACTATGACACATGTAATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATCTAAATCGTGTCTCATATCCGGTGTTCAAGGAGACTTGCAATCAAGAAATTGACAAGACCATTAAAAGTTCTCCTAAGAGCGGACAATCATTATACAGCCAGCACCAAGAGATGTGCGGCATCCTTCAGCTTTCTGATGAAGTTTTGGCTCATAACATCTTATCACGCTTGACACCAAGGGATGTTGCATCAATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACACAGAATGAACATGTTAGAAAGATGGTGTGTCAAAATGCATGGGGAAAAGAAGTGACTGGTGCATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTTAGCCGAGAACTAACCACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTAGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGGCTCGTATTGTTTGGAGGTGAAGGAGTCGATATGCAGCCAATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGCAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACCCTCTCTTGCTTAAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGTCGGGAAGGATTGCTTAATGACGTATTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTCTGTGGTGGAACTCCACCTCTCCCTAGATCTTGGCACAGCTCTTGCACTGTTGAAGGGTCTAAATTGGTAGTTTCAGGTGGATGTACAGATGCTGGGGTACTCCTTAGTGACACATACTTACTGGACCTTACCACGGATAACCCAACGTGGAGAGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGGCTGGGGCACTCACTCTCTGTATATGGCAAGACAAAAATTCTCATGTTCGGTGGACTTGCCAAGAGTGGACACCTGCGATTACGATCAGGAGAGGCTTATACGATTGATTTGGAAGATGAAGAGCCTCAGTGGAGGCAACTAGAATATAGTGCATTTTCTGGAATAGGTGGTCAAAGTGCTGTGGTTCCTCCACCTCGGCTGGATCACGTTGCAGTGAGCATGCCTTGTGGGAGGATTATTATTTTTGGAGGTTCCATTGCAGGGCTCCACTCTCCATCCCAGCTCTTTCTTTTGGACCCTTCTGAGGAGAAACCATCGTGGAGGATCCTTAATGTGCCAGGGCAACCGCCAAAATTTGCTTGGGGTCACAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGACATACAGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCTGGCAGGACTCCGACCTAAGGAGATCAATAACAGGACCTCGACAATTATACCCTGTTAACAGATTTACCATCCTTCATCAAACTATGGTCATCAATACCCAAATTCCAAGCAAGACAATACATAAAGTTGGTGAATCTAATTCAGGATAG 2139 0.4647 MSKYFPLCYTLTLWPPSNILLCFPLRASERDTVCQRLFFPYMAIAREMEDEGEVRNNAGKRLKCMKNEEKDQTEEGAAEDESELPLKPGLFYYPTTPTSFVVSDALEPDFPIIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGIPLVNRLRLSPIHDDDGTMTHVIGIQLFSEANIDLNRVSYPVFKETCNQEIDKTIKSSPKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTQNEHVRKMVCQNAWGKEVTGALELMTKKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGKTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLEYSAFSGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASWQDSDLRRSITGPRQLYPVNRFTILHQTMVINTQIPSKTIHKVGESNSG 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2311 712 CDD PAS 96 206 IPR000014 -
Prci5g2311 712 Gene3D - 533 708 IPR015915 GO:0005515
Prci5g2311 712 NCBIfam PAS domain S-box protein 111 206 IPR000014 -
Prci5g2311 712 Gene3D - 249 300 - -
Prci5g2311 712 SUPERFAMILY PYP-like sensor domain (PAS domain) 107 207 IPR035965 -
Prci5g2311 712 Pfam Galactose oxidase, central domain 350 400 - -
Prci5g2311 712 Pfam Kelch motif 574 621 IPR011498 GO:0005515
Prci5g2311 712 FunFam Putative LOV domain-containing protein 327 532 - -
Prci5g2311 712 SUPERFAMILY F-box domain 248 308 IPR036047 GO:0005515
Prci5g2311 712 SUPERFAMILY Kelch motif 569 664 IPR015915 GO:0005515
Prci5g2311 712 SUPERFAMILY Kelch motif 336 555 IPR015915 GO:0005515
Prci5g2311 712 ProSiteProfiles PAS repeat profile. 112 143 IPR000014 -
Prci5g2311 712 FunFam Adagio protein 1 89 218 - -
Prci5g2311 712 Pfam Galactose oxidase, central domain 464 515 - -
Prci5g2311 712 Pfam Galactose oxidase, central domain 415 461 - -
Prci5g2311 712 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 78 663 - -
Prci5g2311 712 Pfam PAS domain 106 206 IPR000014 -
Prci5g2311 712 Gene3D PAS domain 93 218 - -
Prci5g2311 712 CDD F-box_AtADO-like 255 301 - -
Prci5g2311 712 Gene3D - 328 532 IPR015915 GO:0005515
Prci5g2311 712 Pfam F-box domain 256 293 IPR001810 GO:0005515
Prci5g2311 712 FunFam Putative LOV domain-containing protein 533 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2311 Prci-Chr5 40089702 40097739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2311 99 220 AGC Kinase Gene Family AT5G58140 35.484 2.03e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2311 K12116 - gmx:100301889 1187.56