Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2308 ATGTCGTCGGAAAGTTCTCCCGAGTCGGCGGCTGAGCCCCGCGCGCCTCTTCTTCGTTCCCGCCAGGGGTCCTCTGATGCACCCAGGACTCCTACCCTCGCGCTCCTTCTCGGTCGGGCCGTCGGCCGTCGGGGACCCTCCATGCTGGTGAGGGAGACGGCGGCTCGCGAGCTGGAAGAGCGAAGGGCCGATTGGGGCTACTCGAAGCCTGTCGTGGTTCTTGACATCACGTGGAATATGGCCTTCGTGGTGGTGTCGTTTGTGATGCTTATTTTGACGACCAACGAGAAGCCCAACACGCCGATCCGGGTCTGGATCTGTGGGTATGCGGCGCAGTGCTTGGTTCATGTGGTGCTTGTGTGGCTCGAGTATAGGAGAAGGACTGGCAGGGTTTCGCGGATGCGGAGGGCTCAGGACGGGGATACCGGAGCTCGAAATATCGAGGATGTCAACGACAGTGAGGATGAGGAAACCGGAGATGGGAGTTCATTGAATTCGTCTCGCTCTGGATTCACGAAACGATGTGAATCAGTGAATACCATGGTTTCATTCCTTTGGTGGATAGTTGGCTTTTATTGGGTGATCTCAGGTGGTGACACTCTTCTGCAAGATGCTCCACGTTTGTATTGGTTGGCTGTTGTTTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTTTTGGCCTGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTACGCAGTTGCTGGACAGGAAGGTGCATCAGAAGCAGATCTTAGCCTACTTCCAAAATATAGATTTCGCATATTAAACAATGAGGAAAAGCCTACTGGTGGAGCAGGATCAATGGTTCCTTTAGAAACAACTAGTGGGTACCTGGCAAATGAAAGAATACTTCTACCTGAAGATGCGGAATGCTGTATATGTCTCACTTCATACGAGGACGGTGCAGAACTCAATGCTCTACCCTGTAACCATCATTTCCATTCTACATGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTGTGA 1083 0.5042 MSSESSPESAAEPRAPLLRSRQGSSDAPRTPTLALLLGRAVGRRGPSMLVRETAARELEERRADWGYSKPVVVLDITWNMAFVVVSFVMLILTTNEKPNTPIRVWICGYAAQCLVHVVLVWLEYRRRTGRVSRMRRAQDGDTGARNIEDVNDSEDEETGDGSSLNSSRSGFTKRCESVNTMVSFLWWIVGFYWVISGGDTLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSLLPKYRFRILNNEEKPTGGAGSMVPLETTSGYLANERILLPEDAECCICLTSYEDGAELNALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2308 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 358 IPR013083 -
Prci5g2308 360 Pfam Ring finger domain 308 350 IPR001841 -
Prci5g2308 360 PANTHER TARGET OF ERK KINASE MPK-1 40 358 - -
Prci5g2308 360 SUPERFAMILY RING/U-box 297 354 - -
Prci5g2308 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Prci5g2308 360 MobiDBLite consensus disorder prediction 135 170 - -
Prci5g2308 360 MobiDBLite consensus disorder prediction 135 149 - -
Prci5g2308 360 FunFam E3 ubiquitin protein ligase RIE1 289 357 - -
Prci5g2308 360 MobiDBLite consensus disorder prediction 1 30 - -
Prci5g2308 360 CDD RING-H2_PA-TM-RING 308 350 - -
Prci5g2308 360 SMART ring_2 309 349 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2308 Prci-Chr5 40064193 40069280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2308 1 359 C3H Transcription Factor Family AT1G68070 69.081 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2308 - K13148 qsa:O6P43_025918 555.058