Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2301 ATGGGTATCACTTATCACAGCTTATTCGATGCTACCTTTCTCTTACATGTTCTCCCTGTAAAGAAGTGTGAAGATTCAAAATCGTCCATGGCTGCTCACTTTCACCCGCGTAATGCTATCCAATTCTTCAAGATTATTCTCCAATACTCTCTCGAAGAAGGAAAGCTTAAGGTACCAGACAAATTTGTACGGAGATATGGAGGTGGAATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGAACTCAATGGGAAATACGCTGGACAAAATATAAAAGTGGAGAAGTTTGGTTTGAGAAGGGTTGGGATGATGTTGTTAGATACTACTCTCTAGGTCATGGCCATTTGGTGTTGTTCAAATATGTGGGAACTAGAACTTGTCATTTTGAGGTCAACATTTTTGACAATAGTGCCCTAGAAATGGACTACCCTCTTCATGGAAACCTCCAACAAGTTACTGATAATTCTGACTCGGTTGAAATCTTGTGTCAGAAACCTCCTCTGCAAAAAGTAGCGAGCCGAAAACTGCCATTATCATCTTCTGTTCACCCTTGCAAGAAAATTAGAGCTGAAGAAGCTCAAAGGACCTATAATCAGCAAAAGATGCACTCAGGTGATGGGAATGAGCTCAAGTCCATTAATGCAGAACCGAAACTTATAAAGCTTGAGTTAGAAGTTTCTGCAGAAACTATGGGTGGAAGCAATTTTTCCACTAAAAAAGGTCCAAAATCCATTGCTATCAAAAAACGAAGGGAGAAACCATTGACTTGTGCTGAGAAGGACAGGGCTTTACAAAGAGTCAACACTTTCACGTCTAAAAATCCCTACTTCAAAATTGTCATGCAGCCAGCATACATCAAGAGCTGTTTGTGTGTGCCAGCAAAGTTTGTGAAACAGTATTTGAAGAAGAAGAAGGAAGGAACTGTCCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGTGTGGAGTGCAGTGGGGAAGAAAGAAAGCAGTACAAGTTCCGACTCAGAAGTGGGTGGTCCTCTTTTTCAAAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACACCACCGACATCTCCTTCCTGGTTCATGTTTTTGGAGATTTTGTTAATCCATATGGCTGA 1140 0.4132 MGITYHSLFDATFLLHVLPVKKCEDSKSSMAAHFHPRNAIQFFKIILQYSLEEGKLKVPDKFVRRYGGGMPNPVFLKPPDGTQWEIRWTKYKSGEVWFEKGWDDVVRYYSLGHGHLVLFKYVGTRTCHFEVNIFDNSALEMDYPLHGNLQQVTDNSDSVEILCQKPPLQKVASRKLPLSSSVHPCKKIRAEEAQRTYNQQKMHSGDGNELKSINAEPKLIKLELEVSAETMGGSNFSTKKGPKSIAIKKRREKPLTCAEKDRALQRVNTFTSKNPYFKIVMQPAYIKSCLCVPAKFVKQYLKKKKEGTVLLRVSDGRTWRVECSGEERKQYKFRLRSGWSSFSKDNNLKVGDVCVFELTNTTDISFLVHVFGDFVNPYG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2301 379 CDD B3_DNA 42 135 IPR003340 GO:0003677
Prci5g2301 379 SUPERFAMILY DNA-binding pseudobarrel domain 270 372 IPR015300 -
Prci5g2301 379 PANTHER B3 DOMAIN-CONTAINING 38 369 - -
Prci5g2301 379 CDD B3_DNA 275 371 IPR003340 GO:0003677
Prci5g2301 379 SMART B3_2 276 374 IPR003340 GO:0003677
Prci5g2301 379 SMART B3_2 42 137 IPR003340 GO:0003677
Prci5g2301 379 Pfam B3 DNA binding domain 43 136 IPR003340 GO:0003677
Prci5g2301 379 Pfam B3 DNA binding domain 277 371 IPR003340 GO:0003677
Prci5g2301 379 SUPERFAMILY DNA-binding pseudobarrel domain 39 137 IPR015300 -
Prci5g2301 379 Gene3D - 35 138 IPR015300 -
Prci5g2301 379 Gene3D - 255 374 IPR015300 -
Prci5g2301 379 ProSiteProfiles B3 DNA-binding domain profile. 41 137 IPR003340 GO:0003677
Prci5g2301 379 ProSiteProfiles B3 DNA-binding domain profile. 275 374 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2301 Prci-Chr5 39997749 40000274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2301 42 371 B3 DNA Binding Superfamily AT3G18990 27.746 4.83e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci5g2301 B3 4.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2301 - - pcin:129311873 784.252