Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2300 ATGGGTATCACTTATCACAGCTTATTCGATGCTACCTTTCTCTTACATGTTCTCCCTGTAAAGAAGTGTGAAGATTCAAAATCGTCCATGGCTGCTCACTTTCACCCGCGTAATGCTATCCAATTCTTCAAGATTATTCTCCAATACTCTCTCGAAGAAGGAAAGCTTGTACCAGACAAATTTGTACGGAGATATGGAGGTGGAATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGAACTCAATGGGAAATACGCTGGACAAAATATAAAAGTGGAGAAGTTTGGTTTGAGAAGGGTTGGGATGATGTTGTTAGATACTACTCTCTAGGTCATGGCCATTTGGTGTTGTTCAAATATGTGGGAACTAGAACTTGTCATTTTGAGGTCAACATTTTTGACAATAGTGCCCTAGAAATGGACTACCCTCTTCATGGAAACCTCCAACAAGTTACTGATAATTCTGACTCGGTTGAAATCTTGTGTCAGAAACCTCCTCTGCAAAAAGTAGCGAGCCGAAAACTGCCATTATCATCTTCTGTTCACCCTTGCAAGAAAATTAGAGCTGAAGAAGCTCAAAGGACCTATAATCAGCAAAAGATGCACTCAGGTGATGGGAATGAGCTCAAGTCCATTAATGCAGAACCGAAACTTATAAAGCTTGAGTTAGAAGTTTCTGCAGAAACTATGGGTGGAAGCAATTTTTCCACTAAAAAAGGTCCAAAATCCATTGCTATCAAAAAACGAAGGGAGAAACCATTGACTTGTGCTGAGAAGGACAGGGCTTTACAAAGAGTCAACACTTTCACGTCTAAAAATCCCTACTTCAAAATTGTCATGCAGCCAGCATACATCAAGAGCTGTTTGTGTGTGCCAGCAAAGTTTGTGAAACAGTATTTGAAGAAGAAGAAGGAAGGAACTGTCCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGTGTGGAGTGCAGTGGGGAAGAAAGAAAGCAGTACAAGTTCCGACTCAGAAGTGGGTGGTCCTCTTTTTCAAAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACACCACCGACATCTCCTTCCTGGTTCATGTTTTTGGAGATTTTGTTAATCCATATGGCTGA 1137 0.4134 MGITYHSLFDATFLLHVLPVKKCEDSKSSMAAHFHPRNAIQFFKIILQYSLEEGKLVPDKFVRRYGGGMPNPVFLKPPDGTQWEIRWTKYKSGEVWFEKGWDDVVRYYSLGHGHLVLFKYVGTRTCHFEVNIFDNSALEMDYPLHGNLQQVTDNSDSVEILCQKPPLQKVASRKLPLSSSVHPCKKIRAEEAQRTYNQQKMHSGDGNELKSINAEPKLIKLELEVSAETMGGSNFSTKKGPKSIAIKKRREKPLTCAEKDRALQRVNTFTSKNPYFKIVMQPAYIKSCLCVPAKFVKQYLKKKKEGTVLLRVSDGRTWRVECSGEERKQYKFRLRSGWSSFSKDNNLKVGDVCVFELTNTTDISFLVHVFGDFVNPYG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2300 378 CDD B3_DNA 274 370 IPR003340 GO:0003677
Prci5g2300 378 ProSiteProfiles B3 DNA-binding domain profile. 274 373 IPR003340 GO:0003677
Prci5g2300 378 Gene3D - 35 137 IPR015300 -
Prci5g2300 378 SUPERFAMILY DNA-binding pseudobarrel domain 39 136 IPR015300 -
Prci5g2300 378 SMART B3_2 42 136 IPR003340 GO:0003677
Prci5g2300 378 SMART B3_2 275 373 IPR003340 GO:0003677
Prci5g2300 378 PANTHER B3 DOMAIN-CONTAINING 38 368 - -
Prci5g2300 378 SUPERFAMILY DNA-binding pseudobarrel domain 269 371 IPR015300 -
Prci5g2300 378 Gene3D - 254 373 IPR015300 -
Prci5g2300 378 ProSiteProfiles B3 DNA-binding domain profile. 40 136 IPR003340 GO:0003677
Prci5g2300 378 CDD B3_DNA 42 134 IPR003340 GO:0003677
Prci5g2300 378 Pfam B3 DNA binding domain 43 135 IPR003340 GO:0003677
Prci5g2300 378 Pfam B3 DNA binding domain 276 370 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2300 Prci-Chr5 39997748 40000274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2300 42 370 B3 DNA Binding Superfamily AT3G18990 27.746 4.35e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci5g2300 B3 4.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2300 - - pcin:129311873 777.704