Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2279 ATGGACAAGCTTGTCTTGAACTGTTCCATAGCTCCCATGATTCTGATGATGTACTCTTTCGTCCTTCTGCATGGTACCGAAGCATCCATCGTATCATGCCTCCATACTCCATACCCTCTTGTGTGCAACCACTACATGACCACCGATACACTCTCAACTTTATCTTCTTCTTCTTCCTTCCATGATATGGCTCTCAAGGTCACTCTTGACCAAGCCATTGAAGCTCACAAGCTTGTCTATGCCATGAAACTCGACAGTCACTTCACAGACAAGCGAGCCAAGTTGGCCTGGACAGATTGCCTAGAGCTCTATGAAGACACCGTTTTCCAGCTGAACCGCTCCGTTGCGAGCTCAAGGATTTTAACGATAGGGCTCACCTGGTTAAGTGCCTCCATTGCCAACCAAACTTGCCAAAATGGCTTCCTTGACTTCAACCTTGACGCACACCTCAACGTCCTCCCAGATATGCTCACTAACTTGTCCAAGTTGATCAGCAATTCCTTAGCCATTACCAGTGCCATGTCCACGTCGTCGTCGTCGTCGTTATCAAAAGAACAAATTAATAGTCGAGGGAGAAAGTTGTTGTTCGAGGGATTCCCCGAGTGGGTTTCGAGCTCGGATAGGAGGCTTCTTGCTGTGGCGGAGGCTGATGTTGTGGTGGCGAAGGACGGGAGTGGGGACTATAAGACGATAACGGAGGGCGTGGAGGCGGCGAGTAAGTTGAGCGGCGGCGGAGGGAGGAGAGTGGTGGTGCACGTAAAGGGGGGTGTGTATGAAGAGAACGTAGTGATAAAGAGGACAATGAAGAACCTGATGATCGTGGGAGATGGGATTGGTGTTACCGTCGTTTCGGCTAACAAGGATGCTCAAGAAACCACCACTTTTCGTTCCGCTACTTTTGCTGTTTCTGGAGACAACTTCATCGCCCGAGATATAACCTTCGAGAACACCGCCGGGCCTGGGAAGCACCAGGCGGTGGTTCGCTCCGGCGCCGACCACTCAGTGTTCTACCGGTGCAGCTTCAAGGGCTACCAAGACACCTTATACGTCTACTCACAGCGCCAATTCTACCGTAACTGCGATATCTATGGCACCGTGGACTTCATCTTCGGCGACGCCGTTGCTATCCTCCAGAACTGCAACATCTACGTGAGGAGGCCAATGAGCAACCAGCAGAACACAGTGACGGCACAGGGGAGATCCGACCCAAACGAGAACACCGGCATTATTCTCCACGGCTGCAGCGTGATTGCGTCATCGGAGAAGCCGGTGCAGAGCTCGTTCAAGATTCTAGGAAGGCCGTGGAAGGAATACTCGAGGACGGTGGTCATGAAGAGCAGCCTGGACGGCGGGTGTGAGGTGATAGACCCGGCGGGGTGGATGCCGTGGAGCGGGAGCTTCGCCCTGAAGACTCTATATTACGGTGAATATATGAATACTGGAGGCGGAGCCGCCAGGCGGAGGGTGAAATGGCCAGGGTTTCATGTGATCACGAGTCCCACGGAGGCCGGAAAGTTCACAGTGGGGAATTTTCTGGCTGGTGAGTCGTGGATTGCCGGCACCGGTGTACCGTTCGAAGCAGGGTTATGA 1590 0.5289 MDKLVLNCSIAPMILMMYSFVLLHGTEASIVSCLHTPYPLVCNHYMTTDTLSTLSSSSSFHDMALKVTLDQAIEAHKLVYAMKLDSHFTDKRAKLAWTDCLELYEDTVFQLNRSVASSRILTIGLTWLSASIANXQTCQNGFLDFNLDAHLNVLPDMLTNLSKLISNSLAITSAMSTSSSSSLSKEQINSRGRKLLFEGFPEWVSSSDRRLLAVAEADVVVAKDGSGDYKTITEGVEAASKLSGGGGRRVVVHVKGGVYEENVVIKRTMKNLMIVGDGIGVTVVSANKDAQEXTTTFRSATFAVSGDNFIARDITFENTAGPGKHQAVAXRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRNCDIYGTVDFIFGDAVAILQNCNIYVRRPMSNQQNTVTAQGRSDPNENTGIILHGCSVIASSEMXPVQSSFKTXLGRPWKEYSRTVVMKSSLDGGCEVIDPAGWMPWSGSFALKTLYYGEYMNTGGGAATXRRVKWPGFHVITSPTEAGKFTVGNFLAGESWIAGTGVPFEAGL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2279 535 Pfam Plant invertase/pectin methylesterase inhibitor 32 171 IPR006501 GO:0004857
Prci5g2279 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 177 IPR035513 -
Prci5g2279 535 Gene3D - 213 535 IPR012334 -
Prci5g2279 535 Pfam Pectinesterase 218 520 IPR000070 GO:0030599|GO:0042545
Prci5g2279 535 NCBIfam pectinesterase inhibitor domain 32 173 IPR006501 GO:0004857
Prci5g2279 535 SMART PMEI_2 25 171 IPR006501 GO:0004857
Prci5g2279 535 SUPERFAMILY Pectin lyase-like 213 533 IPR011050 -
Prci5g2279 535 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Prci5g2279 535 PANTHER PECTINESTERASE 18 525 - -
Prci5g2279 535 CDD PMEI-like_3 32 171 - -
Prci5g2279 535 FunFam Pectinesterase 213 535 - -
Prci5g2279 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 175 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2279 Prci-Chr5 39768464 39771919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2279 13 535 Carbohydrate Esterase AT1G23200 52.813 0.0 541