Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2268 ATGTTCGCCTTAACGATCCCAACAACGTCTAAACTGAAACCTTTGCGTTTCGTGTTATTCCCACCAAACACCAACATAGAAATCTTCCCAACTGGAAGCAGAATATACCGGAGAAGCAGAGTGTCAGCTTATTCTAAATTAGCCCATCGCAGTTGCCGTCTTTGCTCGAAATCGAACAGTAGACCTATAGTGGCCACGAGGGTCAGTAATGGCGATGATGGCGCATTTGATGCTACCTCGCAACAGTCTTCCTCTCCTCCTCCTGACTTTGAAGAAGAGAAGAGTGCCTCTTCTGGCCTCGGTGATGGTTATGTGGCCTTGTTTGTTCGAATGTTGGGCTTAGATCATGATCCTCTTGATAGAGAACAGGCTATAATTGCTCTCTGGAAATATTCACTGGGTGGAAAGCAGTGTATTGATACTTTAATGCGATTCCCTGGTTGTATTAATCTTACTGTGCGCCTCCTCAGATCAAATTCTAGTTTAGCATGCGAAGGAGCTGCAGGCCTTTTGCGATCTCTATCTTCAGTCAATCTATACAGGAATTCAGTGGCAGAGAGTGGAGCAATAGAAGAGATAAATAGACTGCTGAGGCAGTCTTCCTTGGCTCCTGAGGTGAAGGAGCAGAGTATGAGTACATTGTGGAATTTATCTGTGGATGAGAAGCTCCGCATTAAACTTGCAAAGAGTGATATCCTGCCATTGACTAGTAAGTACCTTGAAGACGAGGATGTAAAAGTGAAGGAAGCTGCAGGAGGCATATTGGCAAATTTAGCTTTGAGCCATGTTAACCACCGCATTTTGGTTGAAGCGGGTGTTATACCAAAATTGGCAAAGTTCTTAACTTCTGATCCTGAAGGATCCAAAGTCATTAAAAAGGAAGCAAAAAATGCATTGCTGGAATTTGTTAAGGATGGATATTATAAAATTCTTGTCGTTGAGGAAGGTCTGGTTCCTGTGCCATTGATTGGTGCTGAGGCGTACAAGTCATTCTCCCCTGGTGTGCATTCATGGCCCAAATTACCAGATGGTACAGAGATTGAACGGGCTTCTGTAAAACCTTCCAGGTATGGTGCATCAGAATTACTTCTTGGACTTAATATTGATGATAAAAGTGCTAACATAGAGGAAGAAAAAGTGAATGCGATTGTGGGACGGACACAACAACAATTCCTCGCTCGTATTGGGGCTATAGAATGGGAAGGAAAAAGAACATCTGATTCTGAAAGCTCTGATAGGCAACAACTTACACTTTTGCCTTGGATGGATGGTGTTGCTCGCTTGGTACTTATTCTAGAACTAGAGGATAAGACTGCCATAAAAAGGGCTGCAGAGTCAATAGCTGATGTATCTATAAATGAACATATGCGCATTGCATTCAAGGAGGCTGGAGCTGTTAAGCATTTAGTTCGGCTTTTGAATTGTGATGATGATGCTGTCAGAGTGGCTGTAACTCAAGCTTTGGAGAGGTTGTCTGCCAGCAATGTAGTTTGCCAGAAAATTGAATCTGAGGGAGTGTTAGGTCCTTTAATTAATATTCTAAAATGCTCAGAGATTTCCAAAACTATTGCAGAAAAGTCTTTGAATACAATCGCTCGCATACTAGACCCCAGTAAAGAGATGAAATTGAAGTTTCATGATGGACCAGTTAATGGATCCGAGAAGGCCTTAAGTGGAGTTAGAAATAATGCTATTTCAGCTAGCTTCAGTACCACTGATTATCCGATATCAAACACCACTACCAGGAATGATGTATTGGATTCTGCTTTTGTAGCCCGCCTTGTTGAGATTCTGAAGTCCTCTTCTCCCAGTTTACAAGGAAAAGCTGCATCAGTTCTCGAGTTTGTTGCATTGACTGACCCAACTATGGTCTCTATTATGTCTGTAGATATTGAATCTGCTCTCAATGCTGTCTTTCTGCAAAAAATTTTGAGAATTTCAGATGGAGAACCTGATGTAGAAGATCAGGTTTCAGAAGCATACCCGGTCGAAGTTGAAGAAGCTGGGCTAGCAATATCTGCAGCATCCCGGTTGATGGCGAGACTGCTCGATTGTCAGCATTTTCAAGACAAAGTAAATTCCTCCCATTTCATCGGCTTACTTCGAAAAATCCTCAAATCTTGTATTCCTCTCCACAGCAAAGACTGGGTGGCTGCCTGCCTAGTTAAACTCAGCTCACTCTCCAGTGACATCCCAAGTCTTGATCCTATCAATGTGGAAGTCACACTGTATCAGACAATCCCAAGACTCGTAGAACAGATAAAAACTTCGTTCTCTCTGGAAGCACAGGAAGCTGCTGCTGTAGAACTGAACAGAATAATATCTGAAGAGGTGGTACATTCTGCTAGAGCTGTTGTGTCTGAGGGGGCAATATGTCCACTGGTGAAGCTGATAGAAGAAGGAAGTGAAAGGGCGGTTGAAGCAGGATTGGCTATATTGTATAATCTGAGCATGGGCCGTGAGAATCATTCATTGATTGTTGCTGCTGGAGCAGTCCCGGTGTTGAGAAGGATTGTGCTGTCACAAAGGCCACAATGGGAAAGGGCCCTTCATTTGCTGAGGAATTTGTCAACATGA 2577 0.4307 MFALTIPTTSKLKPLRFVLFPPNTNIEIFPTGSRIYRRSRVSAYSKLAHRSCRLCSKSNSRPIVATRVSNGDDGAFDATSQQSSSPPPDFEEEKSASSGLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKQCIDTLMRFPGCINLTVRLLRSNSSLACEGAAGLLRSLSSVNLYRNSVAESGAIEEINRLLRQSSLAPEVKEQSMSTLWNLSVDEKLRIKLAKSDILPLTSKYLEDEDVKVKEAAGGILANLALSHVNHRILVEAGVIPKLAKFLTSDPEGSKVIKKEAKNALLEFVKDGYYKILVVEEGLVPVPLIGAEAYKSFSPGVHSWPKLPDGTEIERASVKPSRYGASELLLGLNIDDKSANIEEEKVNAIVGRTQQQFLARIGAIEWEGKRTSDSESSDRQQLTLLPWMDGVARLVLILELEDKTAIKRAAESIADVSINEHMRIAFKEAGAVKHLVRLLNCDDDAVRVAVTQALERLSASNVVCQKIESEGVLGPLINILKCSEISKTIAEKSLNTIARILDPSKEMKLKFHDGPVNGSEKALSGVRNNAISASFSTTDYPISNTTTRNDVLDSAFVARLVEILKSSSPSLQGKAASVLEFVALTDPTMVSIMSVDIESALNAVFLQKILRISDGEPDVEDQVSEAYPVEVEEAGLAISAASRLMARLLDCQHFQDKVNSSHFIGLLRKILKSCIPLHSKDWVAACLVKLSSLSSDIPSLDPINVEVTLYQTIPRLVEQIKTSFSLEAQEAAAVELNRIISEEVVHSARAVVSEGAICPLVKLIEEGSERAVEAGLAILYNLSMGRENHSLIVAAGAVPVLRRIVLSQRPQWERALHLLRNLST 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2268 858 Pfam Armadillo/beta-catenin-like repeat 453 493 IPR000225 GO:0005515
Prci5g2268 858 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 41 857 - -
Prci5g2268 858 SUPERFAMILY ARM repeat 94 536 IPR016024 -
Prci5g2268 858 SUPERFAMILY ARM repeat 743 857 IPR016024 -
Prci5g2268 858 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 789 831 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 453 493 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 494 536 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 578 618 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 261 304 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 819 858 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 778 818 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 220 260 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 176 219 IPR000225 GO:0005515
Prci5g2268 858 SMART arm_5 733 775 IPR000225 GO:0005515
Prci5g2268 858 Gene3D - 408 630 IPR011989 -
Prci5g2268 858 MobiDBLite consensus disorder prediction 73 91 - -
Prci5g2268 858 MobiDBLite consensus disorder prediction 69 97 - -
Prci5g2268 858 Gene3D - 89 324 IPR011989 -
Prci5g2268 858 Gene3D - 670 858 IPR011989 -
Prci5g2268 858 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 221 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2268 Prci-Chr5 39669727 39676509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2268 147 320 U-box Gene Family AT2G23140 31.609 1.24e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2268 - - pcin:129311654 1626.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g2268 5 39669727 39676509 Prci5g2268 5 39669727 39676509 ECH