Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2267 ATGTTCGCCTTAACGATCCCAACAACGTCTAAACTGAAACCTTTGCGTTTCGTGTTATTCCCACCAAACACCAACATAGAAATCTTCCCAACTGGAAGCAGAATATACCGGAGAAGCAGAGTGTCAGCTTATTCTAAATTAGCCCATCGCAGTTGCCGTCTTTGCTCGAAATCGAACAGTAGACCTATAGTGGCCACGAGGGTCAGTAATGGCGATGATGGCGCATTTGATGCTACCTCGCAACAGTCTTCCTCTCCTCCTCCTGACTTTGAAGAAGAGAAGAGTGCCTCTTCTGGCCTCGGTGATGGTTATGTGGCCTTGTTTGTTCGAATGTTGGGCTTAGATCATGATCCTCTTGATAGAGAACAGGCTATAATTGCTCTCTGGAAATATTCACTGGGTGGAAAGCAGTGTATTGATACTTTAATGCGATTCCCTGGTTGTATTAATCTTACTGTGCGCCTCCTCAGATCAAATTCTAGTTTAGCATGCGAAGGAGCTGCAGGCCTTTTGCGATCTCTATCTTCAGTCAATCTATACAGGAATTCAGTGGCAGAGAGTGGAGCAATAGAAGAGATAAATAGACTGCTGAGGCAGTCTTCCTTGGCTCCTGAGGTGAAGGAGCAGAGTATGAGTACATTGTGGAATTTATCTGTGGATGAGAAGCTCCGCATTAAACTTGCAAAGAGTGATATCCTGCCATTGACTAGTAAGTACCTTGAAGACGAGGATGTAAAAGTGAAGGAAGCTGCAGGAGGCATATTGGCAAATTTAGCTTTGAGCCATGTTAACCACCGCATTTTGGTTGAAGCGGGTGTTATACCAAAATTGGCAAAGTTCTTAACTTCTGATCCTGAAGGATCCAAAGTCATTAAAAAGGAAGCAAAAAATGCATTGCTGGAATTTGTTAAGGATGGATATTATAAAATTCTTGTCGTTGAGGAAGGTCTGGTTCCTGTGCCATTGATTGGTGCTGAGGCGTACAAGTCATTCTCCCCTGGTGTGCATTCATGGCCCAAATTACCAGATGGTACAGAGATTGAACGGGCTTCTGTAAAACCTTCCAGGTATGGTGCATCAGAATTACTTCTTGGACTTAATATTGATGATAAAAGTGCTAACATAGAGGAAGAAAAAGTGAATGCGATTGTGGGACGGACACAACAACAATTCCTCGCTCGTATTGGGGCTATAGAATGGGAAGGAAAAAGAACATCTGATTCTGAAAGCTCTGATAGGCAACAACTTACACTTTTGCCTTGGATGGATGGTGTTGCTCGCTTGGTACTTATTCTAGAACTAGAGGATAAGACTGCCATAAAAAGGGCTGCAGAGTCAATAGCTGATGTATCTATAAATGAACATATGCGCATTGCATTCAAGGAGGCTGGAGCTGTTAAGCATTTAGTTCGGCTTTTGAATTGTGATGATGATGCTGTCAGAGTGGCTGTAACTCAAGCTTTGGAGAGGTTGTCTGCCAGCAATGTAGTTTGCCAGAAAATTGAATCTGAGGGAGTGTTAGGTCCTTTAATTAATATTCTAAAATGCTCAGAGATTTCCAAAACTATTGCAGAAAAGTCTTTGAATACAATCGCTCGCATACTAGACCCCAGTAAAGAGATGAAATTGAAGTTTCATGATGGACCAGTTAATGGATCCGAGAAGGCCTTAAGTGGAGTTAGAAATAATGCTATTTCAGCTAGCTTCAGTACCACTGATTATCCGATATCAAACACCACTACCAGGAATGATGTATTGGATTCTGCTTTTGTAGCCCGCCTTGTTGAGATTCTGAAGTCCTCTTCTCCCAGTTTACAAGGAAAAGCTGCATCAGTTCTCGAGTTTGTTGCATTGACTGACCCAACTATGGTCTCTATTATGTCTGTAGATATTGAATCTGCTCTCAATGCTGTCTTTCTGCAAAAAATTTTGAGAATTTCAGGTCTTAAATTTCTTCTCTATGGAGAACCTGATGTAGAAGATCAGGTTTCAGAAGCATACCCGGTCGAAGTTGAAGAAGCTGGGCTAGCAATATCTGCAGCATCCCGGTTGATGGCGAGACTGCTCGATTGTCAGCATTTTCAAGACAAAGTAAATTCCTCCCATTTCATCGGCTTACTTCGAAAAATCCTCAAATCTTGTATTCCTCTCCACAGCAAAGACTGGGTGGCTGCCTGCCTAGTTAAACTCAGCTCACTCTCCAGTGACATCCCAAGTCTTGATCCTATCAATGTGGAAGTCACACTGTATCAGACAATCCCAAGACTCGTAGAACAGATAAAAACTTCGTTCTCTCTGGAAGCACAGGAAGCTGCTGCTGTAGAACTGAACAGAATAATATCTGAAGAGGTGGTACATTCTGCTAGAGCTGTTGTGTCTGAGGGGGCAATATGTCCACTGGTGAAGCTGATAGAAGAAGGAAGTGAAAGGGCGGTTGAAGCAGGATTGGCTATATTGTATAATCTGAGCATGGGCCGTGAGAATCATTCATTGATTGTTGCTGCTGGAGCAGTCCCGGTGTTGAGAAGGATTGTGCTGTCACAAAGGCCACAATGGGAAAGGGCCCTTCATTTGCTGAGGAATTTGTCAACATGA 2595 0.4297 MFALTIPTTSKLKPLRFVLFPPNTNIEIFPTGSRIYRRSRVSAYSKLAHRSCRLCSKSNSRPIVATRVSNGDDGAFDATSQQSSSPPPDFEEEKSASSGLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKQCIDTLMRFPGCINLTVRLLRSNSSLACEGAAGLLRSLSSVNLYRNSVAESGAIEEINRLLRQSSLAPEVKEQSMSTLWNLSVDEKLRIKLAKSDILPLTSKYLEDEDVKVKEAAGGILANLALSHVNHRILVEAGVIPKLAKFLTSDPEGSKVIKKEAKNALLEFVKDGYYKILVVEEGLVPVPLIGAEAYKSFSPGVHSWPKLPDGTEIERASVKPSRYGASELLLGLNIDDKSANIEEEKVNAIVGRTQQQFLARIGAIEWEGKRTSDSESSDRQQLTLLPWMDGVARLVLILELEDKTAIKRAAESIADVSINEHMRIAFKEAGAVKHLVRLLNCDDDAVRVAVTQALERLSASNVVCQKIESEGVLGPLINILKCSEISKTIAEKSLNTIARILDPSKEMKLKFHDGPVNGSEKALSGVRNNAISASFSTTDYPISNTTTRNDVLDSAFVARLVEILKSSSPSLQGKAASVLEFVALTDPTMVSIMSVDIESALNAVFLQKILRISGLKFLLYGEPDVEDQVSEAYPVEVEEAGLAISAASRLMARLLDCQHFQDKVNSSHFIGLLRKILKSCIPLHSKDWVAACLVKLSSLSSDIPSLDPINVEVTLYQTIPRLVEQIKTSFSLEAQEAAAVELNRIISEEVVHSARAVVSEGAICPLVKLIEEGSERAVEAGLAILYNLSMGRENHSLIVAAGAVPVLRRIVLSQRPQWERALHLLRNLST 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2267 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 795 837 IPR000225 GO:0005515
Prci5g2267 864 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 41 863 - -
Prci5g2267 864 Gene3D - 89 324 IPR011989 -
Prci5g2267 864 SMART arm_5 453 493 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 494 536 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 578 618 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 784 824 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 825 864 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 739 781 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 261 304 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 220 260 IPR000225 GO:0005515
Prci5g2267 864 SMART arm_5 176 219 IPR000225 GO:0005515
Prci5g2267 864 SUPERFAMILY ARM repeat 749 863 IPR016024 -
Prci5g2267 864 Pfam Armadillo/beta-catenin-like repeat 453 493 IPR000225 GO:0005515
Prci5g2267 864 MobiDBLite consensus disorder prediction 73 91 - -
Prci5g2267 864 SUPERFAMILY ARM repeat 94 618 IPR016024 -
Prci5g2267 864 MobiDBLite consensus disorder prediction 69 97 - -
Prci5g2267 864 Gene3D - 657 864 IPR011989 -
Prci5g2267 864 Gene3D - 408 628 IPR011989 -
Prci5g2267 864 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 221 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2267 Prci-Chr5 39669727 39676509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2267 147 320 U-box Gene Family AT2G23140 31.609 1.53e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2267 - - pcin:129311654 1647.1