Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2224 ATGGCGGTTACACCTAGAAGCTCTTCCGGCTTGGAATTGACCATATCTGTCCCTGGCCTTGCTTCTCCTCCTCGTCTTCCTTTATCTGCGGTGAGAGAGTTGGACATGAACCGAGTACCGTCATCAGAAGAGGAATGGATAACAATGGAAGAGGAAGAAGAAAGCAGTAACGGAGGAGGAGGTCCTCCGCGTAAGAAACTCCGTCTGACCAAGGAACAGTCTCGTCTCCTCGAGGACAGCTTCAGACAAAACCACACTCTGAACCCAAAGCAGAAGGAATCATTGGCAAAGCAGCTGAATCTGCGAGCCAGGCAGGTGGAAGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTACTTGAAGAGATGGTTCGGATCCCTGACAGAGCAGAACAGAAGACTGCGCAAGGAGGTGGAGCAGCTCAGGGCCATGAAAGTGGGTCCCCCGACCGTGATCTCTCCCCACAGTTGCCACCCGCTCCCCGCCTCCACCCTCACCATGTGCCCTCGCTGCGAGAAGGTCACCGCCACCGCCACCCCCGCCGCCGACACCGGCCCCACCGTCTCCTCCTCCCTCCTATAA 609 0.5665 MAVTPRSSSGLELTISVPGLASPPRLPLSAVRELDMNRVPSSEEEWITMEEEEESSNGGGGPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLRKEVEQLRAMKVGPPTVISPHSCHPLPASTLTMCPRCEKVTATATPAADTGPTVSSSLL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2224 202 Gene3D - 56 127 - -
Prci5g2224 202 Coils Coil 133 153 - -
Prci5g2224 202 MobiDBLite consensus disorder prediction 1 15 - -
Prci5g2224 202 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Prci5g2224 202 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Prci5g2224 202 SMART HOX_1 62 124 IPR001356 GO:0003677
Prci5g2224 202 CDD homeodomain 63 121 IPR001356 GO:0003677
Prci5g2224 202 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Prci5g2224 202 MobiDBLite consensus disorder prediction 1 24 - -
Prci5g2224 202 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
Prci5g2224 202 FunFam Homeobox-leucine zipper protein 18 48 125 - -
Prci5g2224 202 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Prci5g2224 202 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Prci5g2224 202 MobiDBLite consensus disorder prediction 38 66 - -
Prci5g2224 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2224 Prci-Chr5 39393846 39396956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2224 31 184 Homeobox Transcription Factor Family AT1G70920 62.893 6.74e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci5g2224 Homeodomain 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2224 K09338 - cpap:110813413 288.115