Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2219 ATGACTCTTACAGGCCTGGTTTCGCTCGTGTTCGATTTTATTGGTCTTGTGCCGCACAAGATCAATCAGAAGCAGGCAATTGCGAGTGAATCAGCAGACCAAGCACCAAGGTTGATTGAAATTGATTGGTGCTGCGTGTGCTTGTCAAGGTTGAAGGAGAAAGACGATACGAAGGTTCTTCCTTGCTTTCACAGATTCCATAAACTTTGTGTTGATAAATGGCTTAATAAGGGTCGCCACAAAACGTGTCCTCTGTGTCGTTTCTCAATGGTAGCAGAAGAGAACAAGTCTCTTGCTTCTGCAGAATTCACTGAGGATATGCTCGATCCTGTTCATATGGAATTTATTTCGCCCCCTAACTTGTGCTATTGGTGA 375 0.44 MTLTGLVSLVFDFIGLVPHKINQKQAIASESADQAPRLIEIDWCCVCLSRLKEKDDTKVLPCFHRFHKLCVDKWLNKGRHKTCPLCRFSMVAEENKSLASAEFTEDMLDPVHMEFISPPNLCYW 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2219 124 SMART ring_2 44 86 IPR001841 -
Prci5g2219 124 SUPERFAMILY RING/U-box 36 91 - -
Prci5g2219 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 103 IPR013083 -
Prci5g2219 124 ProSiteProfiles Zinc finger RING-type profile. 44 87 IPR001841 -
Prci5g2219 124 Pfam Ring finger domain 43 87 IPR001841 -
Prci5g2219 124 PANTHER TARGET OF ERK KINASE MPK-1 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2219 Prci-Chr5 39354185 39355257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2219 12 87 C3H Transcription Factor Family AT5G45290 40.789 1.02e-13 64.3