Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2179 ATGGCCGAGAGATCACTCAAAAGCGAAGAAGAAGACGGTGAGACGAAGTGGAAGAAGATAGTGATAAGGGTGGTATTTGGGGAGAGGACGAAGACAGAGAAGGGTAATGAGAGAGCAATGCTGCGTTGTCAAGCAGACGAATGTGGGGTGGACTTGAGAATGGCGAGCAAGTACCAGCAGAGGCACAAGGTTTGTGGCAGACATTCTAAAGCTTCTGTGGTTTTGGTCTGTGGCATTCGTCAGAGATTCTGCCAACAGTGCAGTTTCATGAAGTGTCGCAGTTCCATGGCAACAAAAGGAGTTGTAGGGATAGACTGGCAGGTCATAACCAACGTCGAAGAAAAACCCACTCACGCATTCCCTCAGTTTCAACCACTCAGCCTCATTCAAATCATCAATCTATCCAAATTTGTGGGCTAA 420 0.4738 MAERSLKSEEEDGETKWKKIVIRVVFGERTKTEKGNERAMLRCQADECGVDLRMASKYQQRHKVCGRHSKASVVLVCGIRQRFCQQCSFMKCRSSMATKGVVGIDWQVITNVEEKPTHAFPQFQPLSLIQIINLSKFVG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2179 139 Gene3D - 38 137 IPR036893 GO:0003677|GO:0005634
Prci5g2179 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 88 IPR044817 GO:0003677
Prci5g2179 139 ProSiteProfiles Zinc finger SBP-type profile. 40 117 IPR004333 GO:0003677
Prci5g2179 139 Pfam SBP domain 43 90 IPR004333 GO:0003677
Prci5g2179 139 SUPERFAMILY SBT domain 41 91 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2179 Prci-Chr5 39090559 39091100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2179 35 88 SBP-box Gene Family AT1G02065 55.556 8.79e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci5g2179 SBP 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2179 - - pcin:129310893 285.419