Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2172 ATGGGAGGTGACGGTGCCGTTGACGACGCGACGGGATCAAAGGGCACTGACGAAGTGAACATCAACATTCGTTGCTCCAATGGGTCTAAGTTTCTGGTTCAGATTAATCTTGAATCCACCGTCAGATCATTCAAGGAAGCTATCGCTCATAAGTGCGATATCCCATCCGATCAACAGCGGCTGATCCATAAAGGTCGAATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGCTGATCGCATTGTTCATCTGGTTCGTGGATTTGCATCTGGTGCAACGACTAATACCACTGGCGGGACCAATGGCACTCCAAATAGTACAAGTGGTCCCAGTGCTAATGAAGGTTGGGGTTTAGGCGCGTCTGGTCTTGGAGCCTCATTATTTCCTGGACAAGGCCTCAATGGGACCAGAGTCAGTGGCATGAATGGCTTGTTTGGATCAGGCCTTTCTAACCCTGAACAAATGCAACAACTAGTTATTTTAAATCCCAATTTGATGAGAGACCTAATGAGCACACCTGCTATGCAGAGTCTGATAAATAATCCTGACACTGTGCGGAATCTTATAATGAGTAATCCGCAGATGCGAGAGATCATGGATCGAAACCCTGAGCTAGCGCACATACTTAATGATCCCAGCACTCTCCGCCAGACTCTTGAAGCTGCAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCACCTGAAGGATTTAACATGCTGAGGCGTATGTATGCAAATGTTCAGGAGCCATTCTTAAATGCCACTATGATGGCAGGTGCTGGAAATGACATCTCTAATCCGTTTGCAGCACTGTCTGGAACTCAAGGTGGCCAAGCCAGCAATCGATCAACTAATTTCTCAAGTACTAGTTCTGAAGCAATTGCTGGTTCCCCCTCTCCCAATACTAGTCCACTCCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACGACAAGGTCAACTAGTGGAGGGAATGCTCAGGCACCCACTACCTTGGGACTTGATCTGCCAGAACCTGAAGGTTTGGCGGGTACTGTACTGGATTCCAGTTTGTTCGCCCAGTTAGTGCAGAGTCCAAATATTTCACGAATGATGCAAAGTATCGTTTCCAACCCACAGGCTGTGAATCAGATACTTGGTGTCAATGCCGAGCAGTGTGGCATGCCTGATTTAACCCCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCTTGATGTCTTCACCAGAGACATTTCAGCATCTCTTGACTTTTCAGCAAGCGCTTTTGTCTCAGCAAGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACCGGCGTGCAAGCCACTCTGAATTCTCGGGGAATGAACAGCCTGTGGTTGGAGACGTTGTCAAACGTGTTTGGTGGACTTGGAACTGGTAGCCTACCTGTTCCAAACAGATCTCATGAGCCACCAGAGCAATTGTATGCAGCCCAGCTTTCGCAACTCCAGGAAATGGGTTTCTCTGATACGCAGGAAAACATAAGGGCCCTTATTGCCACTTCAGGCAATGTTCATGCAGCGATTGAACGGCTTTTGGGGAACTCAGGCCAGTAG 1653 0.4755 MGGDGAVDDATGSKGTDEVNINIRCSNGSKFLVQINLESTVRSFKEAIAHKCDIPSDQQRLIHKGRILKDDQTLQSYGLEADRIVHLVRGFASGATTNTTGGTNGTPNSTSGPSANEGWGLGASGLGASLFPGQGLNGTRVSGMNGLFGSGLSNPEQMQQLVILNPNLMRDLMSTPAMQSLINNPDTVRNLIMSNPQMREIMDRNPELAHILNDPSTLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYANVQEPFLNATMMAGAGNDISNPFAALSGTQGGQASNRSTNFSSTSSEAIAGSPSPNTSPLPNPWTSTRAGGTQNNTTRSTSGGNAQAPTTLGLDLPEPEGLAGTVLDSSLFAQLVQSPNISRMMQSIVSNPQAVNQILGVNAEQCGMPDLTPHLRQMMQNPEFLRLMSSPETFQHLLTFQQALLSQQGQQQSTQESGQTGRGTGVQATLNSRGMNSLWLETLSNVFGGLGTGSLPVPNRSHEPPEQLYAAQLSQLQEMGFSDTQENIRALIATSGNVHAAIERLLGNSGQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2172 550 MobiDBLite consensus disorder prediction 284 348 - -
Prci5g2172 550 Pfam UBA/TS-N domain 508 544 IPR015940 -
Prci5g2172 550 SMART uba_6 508 546 IPR015940 -
Prci5g2172 550 MobiDBLite consensus disorder prediction 95 119 - -
Prci5g2172 550 CDD Ubl_Dsk2p_like 19 91 - -
Prci5g2172 550 Gene3D - 8 102 - -
Prci5g2172 550 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Prci5g2172 550 Gene3D - 491 550 - -
Prci5g2172 550 MobiDBLite consensus disorder prediction 95 117 - -
Prci5g2172 550 SMART ubq_7 19 90 IPR000626 GO:0005515
Prci5g2172 550 MobiDBLite consensus disorder prediction 284 359 - -
Prci5g2172 550 Gene3D - 190 248 - -
Prci5g2172 550 CDD UBA_PLICs 508 546 - -
Prci5g2172 550 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
Prci5g2172 550 MobiDBLite consensus disorder prediction 447 467 - -
Prci5g2172 550 FunFam Ubiquitin domain-containing protein DSK2b 491 549 - -
Prci5g2172 550 SUPERFAMILY Ubiquitin-like 16 103 IPR029071 -
Prci5g2172 550 SUPERFAMILY UBA-like 504 546 IPR009060 GO:0005515
Prci5g2172 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 502 547 IPR015940 -
Prci5g2172 550 PANTHER UBIQUILIN 19 545 IPR015496 -
Prci5g2172 550 SMART CBM 145 182 IPR006636 -
Prci5g2172 550 SMART CBM 401 436 IPR006636 -
Prci5g2172 550 SMART CBM 358 397 IPR006636 -
Prci5g2172 550 SMART CBM 195 234 IPR006636 -
Prci5g2172 550 FunFam Ubiquitin domain-containing protein DSK2b 192 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2172 Prci-Chr5 39015506 39020559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2172 19 95 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 1.24e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2172 K04523 - gmx:100776447 658.677