Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2170 ATGGGAGGTGACGGTGCCGTTGACGACGCGACGGGATCAAAGGGCACTGACGAAGTGAACATCAACATTCGTTGCTCCAATGGGTCTAAGTTTCTGGTTCAGATTAATCTTGAATCCACCGTCAGATCATTCAAGGAAGCTATCGCTCATAAGTGCGATATCCCATCCGATCAACAGCGGCTGATCCATAAAGGTCGAATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGCTGATCGCATTGTTCATCTGGTTCGTGGATTTGCATCTGGTGCAACGACTAATACCACTGGCGGGACCAATGGCACTCCAAATAGTACAAGTGGTCCCAGTGCTAATGAAGGTTGGGGTTTAGGCGCGTCTGGTCTTGGAGCCTCATTATTTCCTGGACAAGGCCTCAATGGGACCAGAGTCAGTGGCATGAATGGCTTGTTTGGATCAGGCCTTTCTAACCCTGAACAAATGCAACAACTAGTTATTTTAAATCCCAATTTGATGAGAGACCTAATGAGCACACCTGCTATGCAGAGTCTGATAAATAATCCTGACACTGTGCGGAATCTTATAATGAGTAATCCGCAGATGCGAGAGATCATGGATCGAAACCCTGAGCTAGCGCACATACTTAATGATCCCAGCACTCTCCGCCAGACTCTTGAAGCTGCAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCACCTGAAGGATTTAACATGCTGAGGCGTATGTATGCAAATGTTCAGGAGCCATTCTTAAATGCCACTATGATGGCAGGTGCTGGAAATGACATCTCTAATCCGTTTGCAGCACTGTCTGGAACTCAAGGTGGCCAAGCCAGCAATCGATCAACTAATTTCTCAAGTACTAGTTCTGAAGCAATTGCTGGTTCCCCCTCTCCCAATACTAGTCCACTCCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACGACAAGGTCAACTAGTGGAGGGAATGCTCAGGCACCCACTACCTTGGGACTTGATCTGCCAGAACCTGAAGGTTTGGCGGGTACTGTACTGGATTCCAGTTTGTTCGCCCAGTTAGTGCAGAGTCCAAATATTTCACGAATGATGCAAAGTATCGTTTCCAACCCACAGGCTGTGAATCAGATACTTGGTGTCAATGCCGAGCAGTGTGGCATGCCTGATTTAACCCCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCTTGATGTCTTCACCAGAGACATTTCAGCATCTCTTGACTTTTCAGCAAGCGCTTTTGTCTCAGCAAGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACCGGCGTGCAAGCCACTCTGAATTCTCCGGCAGGGGGAATGAACAGCCTGTGGTTGGAGACGTTGTCAAACGTGTTTGGTGGACTTGGAACTGATTGGGTTGCTCTCTCACCGACTTGTCTGTCTCGTCAGAGCCACCAGAGCAATTGTATGCAGCCCAGCTTTCGCAACTCCAGGAAATGGGTTTCTCTGATACGCAGGAAAACATAA 1596 0.4756 MGGDGAVDDATGSKGTDEVNINIRCSNGSKFLVQINLESTVRSFKEAIAHKCDIPSDQQRLIHKGRILKDDQTLQSYGLEADRIVHLVRGFASGATTNTTGGTNGTPNSTSGPSANEGWGLGASGLGASLFPGQGLNGTRVSGMNGLFGSGLSNPEQMQQLVILNPNLMRDLMSTPAMQSLINNPDTVRNLIMSNPQMREIMDRNPELAHILNDPSTLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYANVQEPFLNATMMAGAGNDISNPFAALSGTQGGQASNRSTNFSSTSSEAIAGSPSPNTSPLPNPWTSTRAGGTQNNTTRSTSGGNAQAPTTLGLDLPEPEGLAGTVLDSSLFAQLVQSPNISRMMQSIVSNPQAVNQILGVNAEQCGMPDLTPHLRQMMQNPEFLRLMSSPETFQHLLTFQQALLSQQGQQQSTQESGQTGRGTGVQATLNSPAGGMNSLWLETLSNVFGGLGTDWVALSPTCLSRQSHQSNCMQPSFRNSRKWVSLIRRKT 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2170 531 MobiDBLite consensus disorder prediction 284 348 - -
Prci5g2170 531 Gene3D - 190 248 - -
Prci5g2170 531 PANTHER UBIQUILIN 19 471 IPR015496 -
Prci5g2170 531 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Prci5g2170 531 MobiDBLite consensus disorder prediction 95 119 - -
Prci5g2170 531 CDD Ubl_Dsk2p_like 19 91 - -
Prci5g2170 531 MobiDBLite consensus disorder prediction 95 117 - -
Prci5g2170 531 SMART ubq_7 19 90 IPR000626 GO:0005515
Prci5g2170 531 MobiDBLite consensus disorder prediction 284 359 - -
Prci5g2170 531 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
Prci5g2170 531 SUPERFAMILY Ubiquitin-like 16 103 IPR029071 -
Prci5g2170 531 FunFam Ubiquitin domain-containing protein DSK2b 192 248 - -
Prci5g2170 531 Gene3D - 8 102 - -
Prci5g2170 531 SMART CBM 145 182 IPR006636 -
Prci5g2170 531 SMART CBM 401 436 IPR006636 -
Prci5g2170 531 SMART CBM 358 397 IPR006636 -
Prci5g2170 531 SMART CBM 195 234 IPR006636 -
Prci5g2170 531 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2170 Prci-Chr5 39015506 39020560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2170 19 95 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 1.19e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2170 K04523 - qsu:112016136 554.288