Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2169 ATGGGAGGTGACGGTGCCGTTGACGACGCGACGGGATCAAAGGGCACTGACGAAGTGAACATCAACATTCGTTGCTCCAATGGGTCTAAGTTTCTGGTTCAGATTAATCTTGAATCCACCGTCAGATCATTCAAGGAAGCTATCGCTCATAAGTGCGATATCCCATCCGATCAACAGCGGCTGATCCATAAAGGTCGAATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGAGGCTGATCGCATTGTTCATCTGGTTCGTGGATTTGCATCTGGTGCAACGACTAATACCACTGGCGGGACCAATGGCACTCCAAATAGTACAAGTGGTCCCAGTGCTAATGAAGGTTGGGGTTTAGGCGCGTCTGGTCTTGGAGCCTCATTATTTCCTGGACAAGGCCTCAATGGGACCAGAGTCAGTGGCATGAATGGCTTGTTTGGATCAGGCCTTTCTAACCCTGAACAAATGCAACAACTAGTTATTTTAAATCCCAATTTGATGAGAGACCTAATGAGCACACCTGCTATGCAGAGTCTGATAAATAATCCTGACACTGTGCGGAATCTTATAATGAGTAATCCGCAGATGCGAGAGATCATGGATCGAAACCCTGAGCTAGCGCACATACTTAATGATCCCAGCACTCTCCGCCAGACTCTTGAAGCTGCAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCACCTGAAGGATTTAACATGCTGAGGCGTATGTATGCAAATGTTCAGGAGCCATTCTTAAATGCCACTATGATGGCAGGTGCTGGAAATGACATCTCTAATCCGTTTGCAGCACTGTCTGGAACTCAAGGTGGCCAAGCCAGCAATCGATCAACTAATTTCTCAAGTACTAGTTCTGAAGCAATTGCTGGTTCCCCCTCTCCCAATACTAGTCCACTCCCTAATCCTTGGACCTCTACTAGAGCTGGAGGTACCCAAAATAACACGACAAGGTCAACTAGTGGAGGGAATGCTCAGGCACCCACTACCTTGGGACTTGATCTGCCAGAACCTGAAGGTTTGGCGGGTACTGTACTGGATTCCAGTTTGTTCGCCCAGTTAGTGCAGAGTCCAAATATTTCACGAATGATGCAAAGTATCGTTTCCAACCCACAGGCTGTGAATCAGATACTTGGTGTCAATGCCGAGCAGTGTGGCATGCCTGATTTAACCCCTCATCTTAGACAAATGATGCAAAACCCAGAGTTCCTTCGCTTGATGTCTTCACCAGAGACATTTCAGCATCTCTTGACTTTTCAGCAAGCGCTTTTGTCTCAGCAAGGTCAGCAACAATCAACACAGGAATCAGGTCAAACTGGCAGAGGTACCGGCGTGCAAGCCACTCTGAATTCTCGGGGAATGAACAGCCTGTGGTTGGAGACGTTGTCAAACGTGTTTGGTGGACTTGGAACTGATTGGGTTGCTCTCTCACCGACTTGTCTGTCTCGTCAGAGCCACCAGAGCAATTGTATGCAGCCCAGCTTTCGCAACTCCAGGAAATGGGTTTCTCTGATACGCAGGAAAACATAA 1590 0.4742 MGGDGAVDDATGSKGTDEVNINIRCSNGSKFLVQINLESTVRSFKEAIAHKCDIPSDQQRLIHKGRILKDDQTLQSYGLEADRIVHLVRGFASGATTNTTGGTNGTPNSTSGPSANEGWGLGASGLGASLFPGQGLNGTRVSGMNGLFGSGLSNPEQMQQLVILNPNLMRDLMSTPAMQSLINNPDTVRNLIMSNPQMREIMDRNPELAHILNDPSTLRQTLEAARNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYANVQEPFLNATMMAGAGNDISNPFAALSGTQGGQASNRSTNFSSTSSEAIAGSPSPNTSPLPNPWTSTRAGGTQNNTTRSTSGGNAQAPTTLGLDLPEPEGLAGTVLDSSLFAQLVQSPNISRMMQSIVSNPQAVNQILGVNAEQCGMPDLTPHLRQMMQNPEFLRLMSSPETFQHLLTFQQALLSQQGQQQSTQESGQTGRGTGVQATLNSRGMNSLWLETLSNVFGGLGTDWVALSPTCLSRQSHQSNCMQPSFRNSRKWVSLIRRKT 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2169 529 MobiDBLite consensus disorder prediction 284 348 - -
Prci5g2169 529 PANTHER UBIQUILIN 19 470 IPR015496 -
Prci5g2169 529 Gene3D - 8 102 - -
Prci5g2169 529 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Prci5g2169 529 MobiDBLite consensus disorder prediction 95 119 - -
Prci5g2169 529 CDD Ubl_Dsk2p_like 19 91 - -
Prci5g2169 529 SUPERFAMILY Ubiquitin-like 16 103 IPR029071 -
Prci5g2169 529 Gene3D - 190 248 - -
Prci5g2169 529 MobiDBLite consensus disorder prediction 95 117 - -
Prci5g2169 529 SMART ubq_7 19 90 IPR000626 GO:0005515
Prci5g2169 529 MobiDBLite consensus disorder prediction 284 359 - -
Prci5g2169 529 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
Prci5g2169 529 MobiDBLite consensus disorder prediction 447 467 - -
Prci5g2169 529 FunFam Ubiquitin domain-containing protein DSK2b 192 248 - -
Prci5g2169 529 SMART CBM 145 182 IPR006636 -
Prci5g2169 529 SMART CBM 358 397 IPR006636 -
Prci5g2169 529 SMART CBM 401 436 IPR006636 -
Prci5g2169 529 SMART CBM 195 234 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2169 Prci-Chr5 39015506 39020561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2169 19 95 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 1.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2169 K04523 - qsu:112016136 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0066 10 422654 431037 Prci5g2169 5 39015506 39020561 CCT
Prci5g2169 5 39015506 39020561 Prci5g2169 5 39015506 39020561 ECH