Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2164 ATGGGTCTCTGCTTCTGTTCTCTCGCTCACCGTGGGCTCGAGATTAGCCCCAAAAGACCTCATGATTCAGGATCAGCGACTCCTGAGAGCAGGAATGTTGACTCATTTACGACAAACAGCACTGTAGAGAAGAGCCAATTCTCGATGATTGCAAGCGGAAGCGTCGACGAGACCAATGCTTCTCCAAATCGGCATGTTATAGAAACGCCTACTCACTTGAAGGTTTTCACTTTTGGGAATTTGAAAGCAGCCACCAAGAACTTTAAATCGGACTCATTGCTTGGAGAGGGTGGTTTCGGTAAAGTTTACAAAGGTTGGTTGGATGAGAGGACGCTTTCACCGGCTAAAGCCGGCTCTGGAATGATGGTGGCTATTAAAAAACTCAACCCAGAGAGTATGCAAGGCTGTCAAGAGTGGCAGTCAGAAGTGAATTTCTTGGGAGGCCTTTCTCACCCAAACCTGGTTAAGCTATTTGGTTACTGCCGGGAGGATGATGAACTTCTCCTTGTGTATGAGTTCATGCCTAAGGGAAGCTTGGAGAGCCATCTCTTCATAAGGATTCCTAACGTGGAACCGCTTTCTTGGAACACACGACTCAAAATAGCTATTGATGCAGCTGAAGGCCTGGCCTTCTTGCACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAGGCCTCAAATATATTACTTGATGGGAGTTTTAAGGCTAAAATTTCTGATTTTGGCTTGGCTAAATTGGGGCCTACTGGAGAACAATCACATGTGACTACGAGGATCATGGGCACATATGGCTATGCTGCCCCAGAATACGTTGCAACAGGGCACTTGTATGTAAAGAGCGACGTGTATGGTTTTGGTGTAGTGTTGCTTGAAATGCTGACGGGTCAGAAAGCACTTGATTCAAAGCGGCCATCTGGACAGCACAATCTGGTTGAGTGGGTTAAGCCATGCCTCAGCAGCAAAAAGAAGTTGAAAACCATAATGGATGCTAGAATAGAGGGACAATATTCACTCAATGCAGCATTTCAAGCAGCTCAGCTTATTCTCAAGTGCGTAGAATCTGACCCCAAAAATCGTCCGGCCATGAAGGATGTAGTGGAGACCTTGCAAGATATTGGAGTTACCCAAAACAAGTCAAAAGGTTCCAACAAATGTTCCCAATCCTCACCGCGTCGTCATCATAAGAAGCCTAATCATCACCGATCAGTTCATGATGGACACAAAATCGTTGATCTATGA 1242 0.4533 MGLCFCSLAHRGLEISPKRPHDSGSATPESRNVDSFTTNSTVEKSQFSMIASGSVDETNASPNRHVIETPTHLKVFTFGNLKAATKNFKSDSLLGEGGFGKVYKGWLDERTLSPAKAGSGMMVAIKKLNPESMQGCQEWQSEVNFLGGLSHPNLVKLFGYCREDDELLLVYEFMPKGSLESHLFIRIPNVEPLSWNTRLKIAIDAAEGLAFLHTSEKQIIYRDFKASNILLDGSFKAKISDFGLAKLGPTGEQSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGQKALDSKRPSGQHNLVEWVKPCLSSKKKLKTIMDARIEGQYSLNAAFQAAQLILKCVESDPKNRPAMKDVVETLQDIGVTQNKSKGSNKCSQSSPRRHHKKPNHHRSVHDGHKIVDL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2164 413 CDD STKc_IRAK 94 373 - -
Prci5g2164 413 ProSiteProfiles Protein kinase domain profile. 88 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g2164 413 FunFam Serine/threonine-protein kinase PBS1 174 389 - -
Prci5g2164 413 Gene3D Phosphorylase Kinase; domain 1 48 173 - -
Prci5g2164 413 FunFam Serine/threonine-protein kinase BIK1 54 173 - -
Prci5g2164 413 MobiDBLite consensus disorder prediction 16 39 - -
Prci5g2164 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Prci5g2164 413 MobiDBLite consensus disorder prediction 377 413 - -
Prci5g2164 413 Gene3D Transferase(Phosphotransferase) domain 1 174 396 - -
Prci5g2164 413 MobiDBLite consensus disorder prediction 388 404 - -
Prci5g2164 413 Pfam Protein tyrosine and serine/threonine kinase 91 370 IPR001245 GO:0004672|GO:0006468
Prci5g2164 413 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Prci5g2164 413 PANTHER OS01G0588500 PROTEIN-RELATED 49 372 - -
Prci5g2164 413 SUPERFAMILY Protein kinase-like (PK-like) 62 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2164 Prci-Chr5 38958191 38963496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2164 74 380 Glycoside Hydrolase AT3G07070 47.727 1.80e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci5g2164 PK_Tyr_Ser-Thr 7.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2164 - - gmx:100794193 556.984