Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2161 ATGCCTAAAGCGAAGACCGACTCCACAGCCGACGATAATCGGTTGAAGCGCAAGGGCGCTGGAGTTAGAAGAAAGCGGTCGAGGAAAGCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTATAAGAGGGAACATCCGGACAATAAATCAGTCACTGTTGTCGGTAAAGCTGGTGGTGATCAATGGAAAGCCATGTCTGATGCTGAAAAAGCTCCCTTCATCGCCAAGGCAGAGAAGAAGAAAGCGGAATACGATAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCAAAAATCCTTCAGAGAAAGCAGAGTCTGATAAACCTAAGTCAGAAGTCAACAACGATGATAATGATGATAACGAAGAGTAG 417 0.4532 MPKAKTDSTADDNRLKRKGAGVRRKRSRKAAKDPNKPKRPPSAFFVFMSEFREQYKREHPDNKSVTVVGKAGGDQWKAMSDAEKAPFIAKAEKKKAEYDKTIKAYNMRLAEGKNPSEKAESDKPKSEVNNDDNDDNEE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2161 138 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Prci5g2161 138 CDD HMG-box_AtHMGB1-like 38 98 - -
Prci5g2161 138 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Prci5g2161 138 Coils Coil 88 108 - -
Prci5g2161 138 Gene3D High mobility group box domain 21 122 IPR036910 -
Prci5g2161 138 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 137 IPR031061 -
Prci5g2161 138 MobiDBLite consensus disorder prediction 113 130 - -
Prci5g2161 138 MobiDBLite consensus disorder prediction 19 33 - -
Prci5g2161 138 MobiDBLite consensus disorder prediction 1 43 - -
Prci5g2161 138 SMART hmgende2 36 107 IPR009071 -
Prci5g2161 138 MobiDBLite consensus disorder prediction 1 18 - -
Prci5g2161 138 MobiDBLite consensus disorder prediction 109 138 - -
Prci5g2161 138 SUPERFAMILY HMG-box 24 108 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2161 Prci-Chr5 38935455 38937928 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci5g2161 HMG_box 6.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2161 K25507 - gmx:100499992 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g2161 5 38935455 38937928 Prci5g2161 5 38935455 38937928 ECH