Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2150 ATGTCTTGCTCGTCGTCATCAGGGTCCGAGGAAGAGGATGAGGGCTTCGATTCCTACAGAAAGGGAGGGTACCACGCCGTCAGGGTTGGCGATCAGTTCGCCGGTGGGAGGTACATAGCACAGAGAAAGCTGGGCTGGGGTCAGTTTTCTACCGTCTGGCTCGCATTCGATACTCGCAATTCTACATATGTTGCCCTCAAAATTCAGAAAAGTGCAGCCCAGTTTGCCGACGCTGCCCTTCATGAGATAAATGTTCTTTCATCCATTGCTGAGGGCGACCCTTCAAATTCAAAGTGTGTTGTCCAATTGATCGACCACTTTAAGCACTCAGGCCCAAATGGGCAGCACCATTGCATGGTCCTTGAGATGCTTGGTGATAGCTTGCTTCGTCTGATCAGATATAGACATTACAAAGGCCTCCCAATGAATAAACTTAGAGAAATTTGTAAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACTTGGAATAATCCACTCAGACCTAAAGCCTGAAAATGTCCTTCTCTTATCCACCATTGATCCTGCTAAAGACCCTCTTAGATCTGGACAAAGCCCGATCCTGGAGAGGCCTGAGGGAAGCATGAATGTCGGATTTTCAAGTGTCATTGAGAAAAAGCTGAAAAGGAGAGCAAGAAGGGCAGTTGCTAAAATATCAGGAAGAACTTCATCATTGGGAGAAGTTGGAGTGGTTCCAAAACCCAACAGAAATGTTGATGGAGTTGATGTGCAATGCAAGATAGTCGATTTTGGAAATGCATGCTGGGCAGATAAGCCATTTGCAGAAGAAATCCAGACGAGGCAGTATAGAGCTCCTGAAGTTATATTGCAGGCTGGGTATTCGTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTCGCCACGGGTGATATGATGTTTACTCCCAAGTCTGGACAAGGTTTTAGTGAGGATGAGGACCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCGGAAGGTGA 1020 0.4627 MSCSSSSGSEEEDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAFDTRNSTYVALKIQKSAAQFADAALHEINVLSSIAEGDPSNSKCVVQLIDHFKHSGPNGQHHCMVLEMLGDSLLRLIRYRHYKGLPMNKLREICKCILIGLDYLHRELGIIHSDLKPENVLLLSTIDPAKDPLRSGQSPILERPEGSMNVGFSSVIEKKLKRRARRAVAKISGRTSSLGEVGVVPKPNRNVDGVDVQCKIVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMMFTPKSGQGFSEDEDHLALMMELLGKMPGR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2150 339 Gene3D Transferase(Phosphotransferase) domain 1 92 337 - -
Prci5g2150 339 SUPERFAMILY Protein kinase-like (PK-like) 32 337 IPR011009 -
Prci5g2150 339 ProSiteProfiles Protein kinase domain profile. 38 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g2150 339 SMART serkin_6 38 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g2150 339 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Prci5g2150 339 FunFam Protein kinase superfamily protein 24 123 - -
Prci5g2150 339 Pfam Protein kinase domain 251 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g2150 339 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g2150 339 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 222 - -
Prci5g2150 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Prci5g2150 339 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2150 Prci-Chr5 38864371 38869046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2150 4 337 EF-hand Containing Proteins AT5G22840 52.344 1.12e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Prci5g2150 Pkinase 3.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2150 K08832 - gmx:100784192 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0036 10 285711 289714 Prci5g2150 5 38864371 38869046 CCT