Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2146 ATGATTAAGGTTTGGCTTGTGATGTTAATGGTCCTCTCTAATTGGCTTTCTTCGTCTGGGGCTGGCGTGAATAGTTCAGCAATACCCGAATTTGTAAATATTGGAGGACTCTTCTCTTTCAATAGCACCGTTGGTAAAATTGTAAAAATAGCTATTGAAGCAGCGGTTGCAGATATAAATTCCGATCCTTCCATTCTCGGAAAAACTGATCTGAGGCTCTCAATGCAAGAGGACTCCAAATACAGAGGTTTTCTCAGCATTTCTGAAGTCTTGCGGCTCATGGCAAGACACACTGTGGCTATAATTGGTCCCCAGACATCTGTAACAGCTCATGTCATAGCTCATGTTGCCAACGAGCTCCAAGTTCCGCTTCTATCATTTTCAGCTACAGACCCTACACTCTCTTCACTTCAATTCCCATTCTTTGTTAGAACTGCTCCTAGCGATATTTATCAGATGACTGCAATTGCTGAGCTTATAGACTTCTATGGGTGGAGAGAGGTTATTGCAATTTATGTTGATGATGACCATGGGAGGAATGGAATTGGTTCTTTAGGGGATAAGCTTGCAGAGAAACGTTGTAAAATCTCATATAAAGCACCGATAAGCTCTGAAGCAACTAAGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTCTTGCTGAATCTCGGGTTATAGTTCTTCACGCTACTTCTGTTTGGGGCCCCAAGGTGTTTAATTTGGCAAAATATCTTGGGATGATGGGATCTGGCTATGTCTGGATAGCCACTAACTTTCTCACTACTATTCTGGACTCTGAGAATCACATCCCCTCAGATCAAACAGATGAAATTCAAGGAGTTCTTACACTGCGTGTGCACACATCTGATTCAGAGCTAAAGAGAAATTTCTTTTCTAGGTGGAAAAATCTGACTCGTGGAATGACTGCCGATGGTCCACTCGGATTGAACACTTTTGGCCTCTATGCATATGATACTGTTTATATGCTTGCTCATGCACTTGATACATTTTTCAAACAAGGGAACCGAATCACGTTCTCATATGACCCGAAGCTATCTGAACTACGTGGAGACAACTTGCATCTTGATGAGGTGAACATCTTCGATCAAGGAAATCTGTTGCGTACCAATGTTTATGGGGTTAAAATGACTGGAGTAACAGGTCATATTAAGTATGCATCTGATGGAAATCTTATGAATCCATCATATGAAATCATCAATGTGATAGGAACAGGTGCAAGGAGGATCGGTTACTGGTCTAATCACTCTGGATTATCTGTTGATCCTCCGGAAGTACTTTATTCAAAGCCAGCCAATCATTCCAGTGTGAATCAAAAGCTACTCCCCGTTATTTGGCCTGGAGAAACAACCCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCACCTAAGAATTGGAGTACCAAGAAGGGTTAGTTACCGAGCGTTTATCTCACAAATACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTCCTTGCTGCAGTGAACTTACTGCCCTATGCTGTTCCCTATAAGTTTATTCCATTTGGGGATGGTCAGAGCAATCCTAATAAGACTGACCTTGTTCGTATGATCACAGCTGGCGTCTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGTAAGAACAAGGATGGTGGATTTTACTCAGCCGTATATCGAGTCTGGTCTAGTAGTAGTAGCACCTGTTAAGAAGGTAGAATCCAATGCGTGGGCTTTCCTGAGGCCATTTACACCAATGATGTGGTGTGTCACTGCAATCTTCTTCTTAGCGGTGGGAGCTGTTGTTTGGATATTGGAGCATAGGCTGAATGATGATTTTCGAGGACCTCCCAAAAAGCAAGTTGTGACAATTTTGTGGTTTAGCTTTTCAACTATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTCGTGCTACTTATATGGCTATTTGTGGTTCTTATAATTAATTCAAGTTACACAGCAAGTCTGACCTCAATCCTTACAGTACAACAGCTTTCTTCCCCAATTAAAGGCATTGAAAGTTTAGTAAACAGCAAAGAACCTGTTGGCTACTCACAGGGTTCTTTCAGTCGAGATTACTTAGTTGAGGAAGTTGGTATTCATGAATCAAGACTAGTTCCTCTGAAAAATGGAGATGAGACTGCTAAAGCATTGAAAAGTGGTCCCAAAAATGGTGGTGTTGCTGCATATGTCGATGAGCGTGCTTATGTTGAACTCTTCCTTTCAAGCCGGTGTGATTTTACCATTGTAGGTCACGAGTTCTCCAGAGATGGTTGGGGATTTGCATTTCCAAGAGACTCTCCTTTAGCAGTTGACCTATCAACAGCTATTCTGGAACTGGCAGAGAATGGAGATCTTCAAAGAATCCATGACAAATGGCTCTTGAATAGTGCGTGCTTAGCTCAAGGCGCAAAGCTTGAAGTGGACAGACTTGACCTCAAAGCCTTCTGGGGTCTCTATCTGATGTGTGGACTCGCTTGCTTGCTTGCTCTTCTCATCTATTTCATACAGATGATGAGACAATACACCAAACACTATTCTGACGAACTCGAGTCTTCCGGCAGGAGCTCCATGTCCTGGCACCTCCGGACTTTCCTGACATTTGCGGACGAGAAAGAGGAGGAAATTAAGGACCGGTCCAAGCGCAGGCAAATGGAAAGGATCTCATACAGAAGCAATAGCACTGAGGGTGGATCAATGTCATCACCGACCATATACTCCAACAAAGGATATGCTCAATCCTCTTCAAACAAAAGCATTGATTGTAGTTATGACGCCTGA 2835 0.4282 MIKVWLVMLMVLSNWLSSSGAGVNSSAIPEFVNIGGLFSFNSTVGKIVKIAIEAAVADINSDPSILGKTDLRLSMQEDSKYRGFLSISEVLRLMARHTVAIIGPQTSVTAHVIAHVANELQVPLLSFSATDPTLSSLQFPFFVRTAPSDIYQMTAIAELIDFYGWREVIAIYVDDDHGRNGIGSLGDKLAEKRCKISYKAPISSEATKEEITDVLVQVALAESRVIVLHATSVWGPKVFNLAKYLGMMGSGYVWIATNFLTTILDSENHIPSDQTDEIQGVLTLRVHTSDSELKRNFFSRWKNLTRGMTADGPLGLNTFGLYAYDTVYMLAHALDTFFKQGNRITFSYDPKLSELRGDNLHLDEVNIFDQGNLLRTNVYGVKMTGVTGHIKYASDGNLMNPSYEIINVIGTGARRIGYWSNHSGLSVDPPEVLYSKPANHSSVNQKLLPVIWPGETTQKPRGWVFPNNGRHLRIGVPRRVSYRAFISQIQGTDMFKGFCIDVFLAAVNLLPYAVPYKFIPFGDGQSNPNKTDLVRMITAGVFDAAVGDITITTVRTRMVDFTQPYIESGLVVVAPVKKVESNAWAFLRPFTPMMWCVTAIFFLAVGAVVWILEHRLNDDFRGPPKKQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPVGYSQGSFSRDYLVEEVGIHESRLVPLKNGDETAKALKSGPKNGGVAAYVDERAYVELFLSSRCDFTIVGHEFSRDGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLNSACLAQGAKLEVDRLDLKAFWGLYLMCGLACLLALLIYFIQMMRQYTKHYSDELESSGRSSMSWHLRTFLTFADEKEEEIKDRSKRRQMERISYRSNSTEGGSMSSPTIYSNKGYAQSSSNKSIDCSYDA 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2146 944 Gene3D - 148 425 - -
Prci5g2146 944 PIRSF IGluLR_plant 1 941 IPR017103 -
Prci5g2146 944 Gene3D - 50 400 - -
Prci5g2146 944 Gene3D - 782 812 - -
Prci5g2146 944 FunFam Glutamate receptor 583 713 - -
Prci5g2146 944 FunFam Glutamate receptor 148 303 - -
Prci5g2146 944 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Prci5g2146 944 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Prci5g2146 944 CDD GluR_Plant 472 812 - -
Prci5g2146 944 MobiDBLite consensus disorder prediction 908 944 - -
Prci5g2146 944 FunFam Glutamate receptor 709 816 - -
Prci5g2146 944 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Prci5g2146 944 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Prci5g2146 944 Gene3D - 583 708 - -
Prci5g2146 944 FunFam Glutamate receptor 467 583 - -
Prci5g2146 944 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Prci5g2146 944 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Prci5g2146 944 Gene3D - 728 781 - -
Prci5g2146 944 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 890 IPR015683 -
Prci5g2146 944 Pfam Bacterial extracellular solute-binding proteins, family 3 516 812 IPR001638 -
Prci5g2146 944 Gene3D - 463 582 - -
Prci5g2146 944 MobiDBLite consensus disorder prediction 894 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2146 Prci-Chr5 38821484 38826814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2146 5 912 Ion Channels AT3G51480 58.836 0.0 1146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2146 K05387 - gmx:100788917 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0669 8 4342890 4347303 Prci5g2146 5 38821484 38826814 CCT
Prci5g2146 5 38821484 38826814 Prci5g2146 5 38821484 38826814 ECH
Prci5g2146 5 38821484 38826814 Prci8g0669 8 4342890 4347303 ECH