Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2144 ATGGTAGCTGGCGCGCAGCAGCATCAACAACCACAATCACAGCTTCAACCTCAATCGCAGCAACAGACTCAGCAGGCCACACCCTCTGCACAAGATGAGGCCCTAAAGAGGAACACAGATTGCGTCTACTTTCTCGCTTCCCCCTTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGTGAGTATGCTAGGGTTAATCCCCGAGATTGCTGGTATTGGTTGAATGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGGCAGCCACTGCTGGTAATGGTGGATCATCCGCACCCCCATCGCAGATTGCACCAACTTCTGTATCACATGCGCCTTATAATTCTACAAAGCCAGCTGTGCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTCTTGCATGGACCAAATCCTAACACCAGTAGTAAAGTTCCTCATGTTCAGGTGACTAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAATGGCCCAGATAAGTCAACACAAGAAAGGAAAAATTCCCAAGCAAACATTGCAAAGTCAGTTGCAGGCTCTGGAGCTAAGCCTGCCCAAAGTGTTGAAACTGCTTCACATGGAAATTTAGTTGCTACAGGGAGGCATGCACCACCACCACCAATGGGATTTGATAATGAGGTGTCTAGGTTCAAGGTAGTAAATGCTCCTCCTGTTGCCAATGGAACCACTGTTGCCAGGCCAAACCGAGTGTATCAATCTCATGTATCAGATGATCATAGTTTCCACAACGGCAAGGAAAGTGATGAATTCTTGAGAGAATCCTCACCTGGATTTGATGTTCTTGTAGCTGATGAACTGAGGAATTCCGATTACTATAACAGAGAGGACCAATTTGGAAAAGCAAAAGGTCAAGATGGGTTGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCTGATTTTGACCAGGAAAGATATTGTGGCCCACAAGGTTATGACTCATACGATCACATGCAAGAGACATATTTATGGGATCAGCCCAGGAATTCATCTGAAAGAATATTCAGGGCAGCAACCCATTTAGAAAGGATGGCTCATCGCAGATCTGGCAGTCCTGAAAATGTTGTGGTCTCAGATCTCCGACATCATTTATCTAAGCGCAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATGCACATCAGAGCCATGATGATGAGCAAAGTCACCGATTCTCTTCTCAAAAGGATGCTCACCAGTTACCTCTGAATGAAAGCGCTCTCAGTAATCGCCTCCGAGGCAGGATAAAGCTTCCAGCAAATGGTGGTGACGAATACATGGAGAGGGAATCAGATAGGGGAAGAAGTAGAACCACATTGTCACCTGGATCTATGCAGGCTCCTCACCTGGGTAGGTTCCGAGATAGATTGAGAGGAAGAGTGCAAGAAGATTGTGAGAGGAAAAACTTCAGGGATCGACCAATAAGGAGAGAAATAGATGGGGACCAAAATGTTGATTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAAGAATGGTAAGAATAAGGAGCATCAGTTGCTTGGGAAGAGGAAAAGTTTGAAGGAACAACAACAATCTGAAGATGATTTCTTGTTTGAAGGCCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAGAGCAGCTGGCGTTGAAGCAGCTTCGAAGAGTGGCAAATCTTCTGAGAATAAAGGAAACAATAAAGACACAGAAGTTGCTAATGGCTCAGAATACACCTCTGTCACAGATGCACAAAATGACACTCTGCCTGCAAATAAGGAAGACGTTAAGAACCAGGAATCCAAGTTTCAGTCAACAGAGAACACGATTGAAAGAGATGCAGACAAGATTGATGTAACTCATGCTCAATCATCTGAAGAAGGAATGATGGACAACCAAGCAATAGAAGACCAGGAGTATGAAGGTGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGTTGACGAGGGAGACTATAATTTTGATGAAGGTGAAAATCCAGAGCAGGAAGAATACATGGATGATGAGGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTCACATGA 2187 0.4385 MVAGAQQHQQPQSQLQPQSQQQTQQATPSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQAATAGNGGSSAPPSQIAPTSVSHAPYNSTKPAVPCIFFQKGLCLKGDRCAFLHGPNPNTSSKVPHVQVTNQVTEPPSFKKVFNGPDKSTQERKNSQANIAKSVAGSGAKPAQSVETASHGNLVATGRHAPPPPMGFDNEVSRFKVVNAPPVANGTTVARPNRVYQSHVSDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYNREDQFGKAKGQDGLNLDSVNEYDLGHSVDYKSVADFDQERYCGPQGYDSYDHMQETYLWDQPRNSSERIFRAATHLERMAHRRSGSPENVVVSDLRHHLSKRRRVNGLKSVVSHDYAHQSHDDEQSHRFSSQKDAHQLPLNESALSNRLRGRIKLPANGGDEYMERESDRGRSRTTLSPGSMQAPHLGRFRDRLRGRVQEDCERKNFRDRPIRREIDGDQNVDFDGPKSLAELRNGKNGKNKEHQLLGKRKSLKEQQQSEDDFLFEGPKPLSEILKEKRAAGVEAASKSGKSSENKGNNKDTEVANGSEYTSVTDAQNDTLPANKEDVKNQESKFQSTENTIERDADKIDVTHAQSSEEGMMDNQAIEDQEYEGDDQKDGDYYYEQVDEGDYNFDEGENPEQEEYMDDEDGDDFAKKIGVMLT 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2144 728 MobiDBLite consensus disorder prediction 98 122 - -
Prci5g2144 728 FunFam Zinc finger CCCH domain-containing protein 17 29 92 - -
Prci5g2144 728 Pfam RNA-binding, Nab2-type zinc finger 133 153 - -
Prci5g2144 728 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Prci5g2144 728 MobiDBLite consensus disorder prediction 1 32 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 540 567 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 420 436 - -
Prci5g2144 728 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
Prci5g2144 728 SUPERFAMILY CCCH zinc finger 129 153 IPR036855 GO:0046872
Prci5g2144 728 MobiDBLite consensus disorder prediction 518 718 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 464 478 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 691 715 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 420 493 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 175 215 - -
Prci5g2144 728 SMART c3hfinal6 68 91 IPR000571 GO:0046872
Prci5g2144 728 SMART c3hfinal6 129 154 IPR000571 GO:0046872
Prci5g2144 728 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Prci5g2144 728 MobiDBLite consensus disorder prediction 630 659 - -
Prci5g2144 728 MobiDBLite consensus disorder prediction 187 201 - -
Prci5g2144 728 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 32 726 - -
Prci5g2144 728 Gene3D - 120 179 - -
Prci5g2144 728 Gene3D - 23 93 - -
Prci5g2144 728 ProSiteProfiles Zinc finger C3H1-type profile. 35 64 IPR000571 GO:0046872
Prci5g2144 728 MobiDBLite consensus disorder prediction 593 629 - -
Prci5g2144 728 Pfam Zinc-finger containing family 36 92 IPR041686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2144 Prci-Chr5 38783592 38787528 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci5g2144 zf-CCCH_3 1.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2144 - - gmx:102669253 834.328