Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2141 ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGAGAACCATTCCTTCAAGCCTTCTCGAGTTCTGAAGAAAACACAGACTTCTGCTCCGCCGCCGATCGAGTCCTTTGCTTATAGGTCTGCTAAGCAAGAGAATTCTGATCAAAGTAGCGATGATTGCGTCCTAGTGGCAGACAATTTGGAGGATGAGGATGTGGAACTTGAGGAAGGCAAGGCTGGGGCAGTAGTAAATCGTGGCCGTCGGTTCGTTGTCGATGACGAGGAGAGCGATAGGGATGCTCCGGAAGTGTATGAAATTAAGTCAACGGATGAGGACGAAGTAGAAGAGGACGAAGCGGATGAAAACGATGTAGTGGGAAGGGCTTTGTACAAGTGTTCAAAAATATCTGCAGAATTGAAAAGAGAGCTATATGGGTCATCGGGGACTGCTTGCGATCGGTATTCTGAGTCAGAATCTTCTTCAGTGAGGATTGTAAATCAGGATGATATTGATGTGGCATGCGGGTCTGAGGATTCTGATTTTCAGCCCATCCTCAAGCCGTATCAGTTGGTTGGTGTCAACTTTCTGCTTTTGTTGTATCGGAAGGGTATTGGAGGAGCGATATTGGCAGATGAAATGGGTCTTGGGAAAACGATTCAGGCGATCACATATCTAACCTTACTGAAACACCTGCACAATGATCCTGGCCCGCATCTTATAGTGTGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGCTGCAAAGGTGGTGTCCATCCTTTCCTGTTCTACAATACCACGGCTCTGGACGAGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAACGTTCTCCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAGAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAAAATAGTTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCAAACCAGCGTTTGATGCTGACAGGGACACCCCTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCAGATATTTTTGCTACCGAAGATATTGACTTGAAAAGGTTACTGAATACAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATCTTGGGGCCATTTATTTTACGGCGACTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATTCAACGAGTTGAATATGTTGCAATGGAAGTGCAGCAGGAAAGTGCTTATAAGGAAGCCATCGAGGAGTACCGTGCTATTTCACAAGGTCGTATGGCAAAATGTTCTGGGCCTAACTCTAACAATATTCTTGAAGTTCTTCCTCGTCGACAAATCAACAATTATTTTGTACAGTTTCGGAAGATTGCAAACCATCCCTTGTTGATTAGGCGAATCTATAGTGATGAGGATGTTATTCGCTTTGCTACGAAGTTACATCCAGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAGCTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACGTCATTATGGTGTCAATGATAGAAAGGGTGTCCTTCCAGATAGAAATGTTATGTCTTCTGCAAAATGTCGGGCCTTAGCAGACCTTCTTCCTTCACTTCAAAAGGGTGGTCATCGTGTTTTAATATTTAGTCAGTGGACATCTATGCTTGATATATTGGAGTGGACACTTGATGTCATTGGATTGACCTACAGACGGCTTGATGGAAGTACGCAGGTAACAGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCTTGCTTGCTTTCTACGAGAGCTGGGGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATAGGATAGGTCAAACGAAGCCTGTAACTATTTATCGGCTGGTGACTAAGGGTACGGTTGATGAAAATGTATATGAGATTGCAAAAAGAAAGCTTGTATTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGACGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTATTGGGTTAA 2193 0.4318 MKRDFYEISDDEWENHSFKPSRVLKKTQTSAPPPIESFAYRSAKQENSDQSSDDCVLVADNLEDEDVELEEGKAGAVVNRGRRFVVDDEESDRDAPEVYEIKSTDEDEVEEDEADENDVVGRALYKCSKISAELKRELYGSSGTACDRYSESESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHLHNDPGPHLIVCPASVLENWERELQRWCPSFPVLQYHGSGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRRILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDIDLKRLLNTEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVAMEVQQESAYKEAIEEYRAISQGRMAKCSGPNSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFATKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLRHYGVNDRKGVLPDRNVMSSAKCRALADLLPSLQKGGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2141 730 Pfam Helicase conserved C-terminal domain 556 668 IPR001650 -
Prci5g2141 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 721 IPR001650 -
Prci5g2141 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 371 IPR014001 -
Prci5g2141 730 Gene3D - 161 431 IPR038718 -
Prci5g2141 730 SMART helicmild6 585 668 IPR001650 -
Prci5g2141 730 Pfam SNF2-related domain 200 486 IPR000330 GO:0005524|GO:0140658
Prci5g2141 730 FunFam Protein CHROMATIN REMODELING 19 isoform A 151 429 - -
Prci5g2141 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 406 IPR027417 -
Prci5g2141 730 CDD SF2_C_SNF 546 679 - -
Prci5g2141 730 SMART ultradead3 176 381 IPR014001 -
Prci5g2141 730 PANTHER SNF2/RAD54 HELICASE FAMILY 66 708 - -
Prci5g2141 730 CDD DEXHc_Snf 180 373 - -
Prci5g2141 730 Gene3D - 538 725 IPR027417 -
Prci5g2141 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 709 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2141 Prci-Chr5 38738005 38746789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2141 201 695 RAD5 or RAD16-like Gene Family AT5G22750 28.247 1.26e-47 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci5g2141 SNF2_N 1.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2141 K14439 - qsa:O6P43_026001 1228