Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2120 ATGGCCAGATCTGTGCCTCTGGTTTCCACCATTTTTGTCCTCCTTCTCCTTCTCGTCGCCACTGAGATGGGGCCGATGGCGGTAGAAGCGAGGACATGCGAGTCTCAGAGTCACCGCTTCAAGGGGCCCTGTATCAGGAAATCTAACTGCGCCAACGTCTGCCGGACTGAGGGCTTCCCCGGCGGCCACTGCCGTGGCTTCCGTCGCCGCTGCTTCTGCACCAAACCCTGTTAG 234 0.5983 MARSVPLVSTIFVLLLLLVATEMGPMAVEARTCESQSHRFKGPCIRKSNCANVCRTEGFPGGHCRGFRRRCFCTKPC 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2120 77 ProSitePatterns Gamma-thionins family signature. 31 54 IPR008176 GO:0006952
Prci5g2120 77 SMART gth_4 32 77 IPR003614 GO:0006952
Prci5g2120 77 FunFam Defensin-like protein CAL1 31 77 - -
Prci5g2120 77 SUPERFAMILY Scorpion toxin-like 31 77 IPR036574 -
Prci5g2120 77 PRINTS Purothionin signature 62 76 IPR008176 GO:0006952
Prci5g2120 77 PRINTS Purothionin signature 32 47 IPR008176 GO:0006952
Prci5g2120 77 Pfam Gamma-thionin family 31 77 - -
Prci5g2120 77 Gene3D - 31 77 IPR036574 -
Prci5g2120 77 PANTHER DEFENSIN-LIKE PROTEIN 1 8 77 - -
Prci5g2120 77 CDD Knot1 42 74 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2120 Prci-Chr5 38662061 38662756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2120 1 77 Plant Defensins Gene Families AT2G02100 64.935 4.33e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2120 - - qsu:112014184 120.553