Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2108 ATGACTCGTATTCTCAAATCCGTGGACAACTCCACCTCCGTTGCCGCCGCCGCCACCATCGCCGCGGCGGCGCCACCTCCTGAGGCCGTGGCTTTGGAATCAGACTTCGTGGTAATCCTCGCGTCTCTGCTTTGTGCTCTCATATGCACCGTCGCCCTCATAGCCGTCTGCCGCTGCACCTGGTTCAGACGCGGCGGATCCGGACCCGGCGGCGGAACTCCTGGACAGTCCCTTGCGAATAAAGGTCTGAAGAAGAAGGTGCTCCGATCCATGCCGAAATTCACTTACATTGACAGTAATTCCGAGAAGTGGCTGGCCACTTCGGAGTGCGCGATTTGCTTGGCCGAGTTCGTCGGAGCCGACGAGATCCGAGTTCTTCCGCAGTGTGGCCACGGTTTCCATGCGGCGTGCATAGACACGTGGCTTGGGTCCCACTCTTCGTGCCCTTCGTGTCGGCAGATTCTTGCTCTACCTCCGAGGTGTCGGAGGTGTGGCCTTTACCCGGCTGTTCGCGGCGGAGAAGCCAACACGATTGGTGGCGGTGAACCGGAGCACAAGTCCCGGCATGACGATAATGCCACTACTGCTATTAATGACGATTATGTTAATAGCTCTACGAGCGAGCATCAAGGGCCAAGAGACAATAATGGATTCCTTCCATAA 663 0.5732 MTRILKSVDNSTSVAAAATIAAAAPPPEAVALESDFVVILASLLCALICTVALIAVCRCTWFRRGGSGPGGGTPGQSLANKGLKKKVLRSMPKFTYIDSNSEKWLATSECAICLAEFVGADEIRVLPQCGHGFHAACIDTWLGSHSSCPSCRQILALPPRCRRCGLYPAVRGGEANTIGGGEPEHKSRHDDNATTAINDDYVNSSTSEHQGPRDNNGFLP 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2108 220 MobiDBLite consensus disorder prediction 175 220 - -
Prci5g2108 220 SMART FANCL_C_2 106 158 - -
Prci5g2108 220 SUPERFAMILY RING/U-box 90 162 - -
Prci5g2108 220 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 165 - -
Prci5g2108 220 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Prci5g2108 220 Pfam Ring finger domain 109 152 IPR001841 -
Prci5g2108 220 CDD RING-H2_EL5-like 109 152 - -
Prci5g2108 220 MobiDBLite consensus disorder prediction 196 213 - -
Prci5g2108 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Prci5g2108 220 MobiDBLite consensus disorder prediction 181 195 - -
Prci5g2108 220 SMART ring_2 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2108 Prci-Chr5 38567022 38568023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2108 31 164 C3H Transcription Factor Family AT1G20823 62.500 5.59e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2108 - - gmx:100787383 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0023 10 211920 213025 Prci5g2108 5 38567022 38568023 CCT