Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2088 ATGGCTTCTGATTCCCTCCACTCTACTGTCCATCAGCAACCCTCACCAAACCTCACTTCGTTCCCCATCATTTTGAAGTTTGAGGAGGTGGTGTACAAAGTGAAACCAGACCATAGAGGACTGTGTCGGGGAAGAAGTTCATGGAGTTCCACAGAGAAGACGATACTGAACGGAATCACAGGCATGGTATTTCCAGGTTCCATAAAGAGAAGAACAGGCTTCGTGGCTCAGGACGATGTTCTATACCCACACCTCACAGTTTCTGAAACTCTGATCTTCACCGCACTTCTCAGGCTTCCCAACAGCCTCACGAATAACGACAAGATTGCTCACGCCGAGAGAGTCATCACAGAGCTGGGCCTGACACGGTGCAGGAACAGCATCGTCGGAGGGGCATTGATCAGAGGAATATCAGGTGGAGAGAAGAAGCGAGTGAGCATAGGTCAAGAAATGCTAATAAATCCGAGCTTGTTGCTGCTAGACGAGCCCACTTCGGGGTTGGACTCCACGACGGCGCAAAGGATATTGACCACCATCAAAGGGGTGGCGCGTGGCGGAAGGACGGTGGTGACCACCATCCACCAACCGTCGAGCCGGCTGTATCATATGTTTGATAAGGTGGTGGTGCTGTCGGAAGGACGATGTATATATAACGGACCTGCATCGGCGGCCATGGAGTATTTTTCTTCTATCGGCTTCTCCACATCCATCACTCTCAATCCTGCTGACTTCTTGCTCGATCTTGCTAACGGGATTGCCCCAGACCCCGAGCATGCAAGCGAACAAAGTGAGGGCCTGGAACAAGAAAGGAAGCTAACCAGAGAAGCTCTCATTTCTGCTTATGACAAGAACATTGCTCCCAAGTTGAAACTTGAGATTTCTAACTCGAGAATGGACATCTACAGCTTCAACAAGCATGCTTCATCTAGAAATGACCCAACAAAAGCAGAGCAATGGTGCACAAGCTGGTGGTATCAGTTCAAGGTGCTGTTACAGAGAGGACTCAAAGAACGAAGGTATGAAGCCTTCAATAGATTGAGAATATTCCAAGTCATAAGTGTGGCTTTTCTTGGTGGACTCTTGTGGTGGCATACCCCAGAATCTCACATTCAAGACAGGGTAGCGTTACTGTTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAACGCAGTTTTCACTTTCCCACAAGAGAGAAGAATGCTGATCAAGGAGAGGTCTTCAGGAATGTATCGTCTCTCTTCCTACTTTATGGCAAGAACAATAGGAGACCTGCCATTGGAGCTGGCACTTCCTACTGCATTCGTGTTCATAATCTATTGGATGGGAGGGCTCAAGCCTCATCCCGTGACTTTCATTCTATCACTTCTCGTGGTCCTGTACAGCGTTCTCGTGTCTCAGAGTCTGGGATTGGCATTCGGAGCTATTCTCATGGAGATCAAGCAGGCCACAACCCTAGCTTCTGTCACAACCCTCGTGTTCCTCATTGCTGGAGGCTACTACGTTCAACAGATCCCTCCATTCATAGCTTGGCTCAAGTACTTGAGCTATAGCTATTACTGTTACAAGCTGCTTCTGGGTGTTCAGTACGATGAAGAAGATTATTATGAGTGTTCCAATGGGGTTTTGTGCAGAGTAGAAGATTTCGGTCCCATCAAATCAATGGGTTTGAATCAATTGTGGGTGGATGTGCTCATGATGGCTCTCATGTTGGTGGGTTATCGACTAGTTGCTTATTTAGCACTACGTAGGGTGAGGTAG 1764 0.479 MASDSLHSTVHQQPSPNLTSFPIILKFEEVVYKVKPDHRGLCRGRSSWSSTEKTILNGITGMVFPGSIKRRTGFVAQDDVLYPHLTVSETLIFTALLRLPNSLTNNDKIAHAERVITELGLTRCRNSIVGGALIRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKGVARGGRTVVTTIHQPSSRLYHMFDKVVVLSEGRCIYNGPASAAMEYFSSIGFSTSITLNPADFLLDLANGIAPDPEHASEQSEGLEQERKLTREALISAYDKNIAPKLKLEISNSRMDIYSFNKHASSRNDPTKAEQWCTSWWYQFKVLLQRGLKERRYEAFNRLRIFQVISVAFLGGLLWWHTPESHIQDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFMARTIGDLPLELALPTAFVFIIYWMGGLKPHPVTFILSLLVVLYSVLVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYVQQIPPFIAWLKYLSYSYYCYKLLLGVQYDEEDYYECSNGVLCRVEDFGPIKSMGLNQLWVDVLMMALMLVGYRLVAYLALRRVR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2088 587 Pfam ABC-2 type transporter 194 270 IPR043926 GO:0140359
Prci5g2088 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 231 IPR027417 -
Prci5g2088 587 Gene3D - 44 231 IPR027417 -
Prci5g2088 587 ProSitePatterns ABC transporters family signature. 137 151 IPR017871 GO:0005524|GO:0016887
Prci5g2088 587 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 237 IPR003439 GO:0005524
Prci5g2088 587 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 67 580 - -
Prci5g2088 587 Pfam ABC transporter 68 165 IPR003439 GO:0005524
Prci5g2088 587 Pfam ABC-2 type transporter 325 531 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2088 Prci-Chr5 38340038 38343224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2088 68 213 Calmodulin-binding Proteins AT2G36910 30.000 2.95e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2088 K05681 - gmx:100794774 885.174