Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2071 ATGGGATCCAGTAGCAGCAAAGCCACTTCTTCTTGCAGTTCGTCGCCATCTTCTGGCAGTTTCCGGAAGGCTCGATCTAAGAAAGGGCACGGAGGACTTCAGTCGTATTGTCTGGGAACAACCTCTGGATCTCATGACGACCAGGTTTGTGATCAGAGTAAAGTAAATGGCAGTGGTGTCATATACAGCAGTTGCACCAAAGCACACTCAAATGAGATGAAATCAAAGTCTTTTAGAGACAATAAAACGAAAACATCTGATGACACGCCTTCCAGCATTGACCTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTACTCGTACTTCTTCAACTGGTAGTCGATTTCTTTCTCGGTTTGGCCTTATTCCTGGTAATATAAGCTTTAGACTTAGCAGAACCAGCAGTGTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACTTCATTGTCAATATTCAACAATGAAGACGACCTTAGTCTGCATCCAGGACCAAATGGCAGCTTGGTTAATAGAAACGAAACTCAACAATCATCAGGTTCGTCTGGCAACTTGCAGTGCAATCCCTCAGTTTCTTCCATTCAGAACGTGGTTAGAGATGGGAATAGTTCATGTGAAGGGCTGGATATAAACTTGTTTTCTCCAAGAACTCATGCTGAGACTGAAAATGTTGAAGTTCGGCGAAATGGAGCTCGAGAACCTGTTGAACGGAATTTCCAGTATAGCCGAACTCTAAGTGTTGGGAGGCTTCGTGATAGAGTTCTTCGTCAATCAACTTTATCTGATGTCAGCTTTTGTCCCCAGCAACAAGAAAGAGAAGCAAGGGATACTAGTGAGGACAATGAAAGACAAGCAGGGGAGGGACATTCAAGAGTATTACCATCTTTTGGTAATGCTATAATTTCTTCTTCTTTGTCTGGTTATCCTCCACCCAGTATGTCTAACTCCTTATTCAACGTGCAAGACAATGAGGTTGAGAATTCACGGTCTAGAGAATCTAGGTACCAAGATCTGCTGGAACACAGGTCCAACTTCCTTGAACGGAGAAGGAGGATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCAGGTTTGAGAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATACTAGTTCAATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCGCCTAATGATGTTGTGGAGTCTTTGCCAGTCAGATTATACACAAAGTTGCATAAATATCAAGAGGATGCTGCCCAATGCTATATATGCCTAGTGGAATATGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCCATCACCAATTTCATAAAACATGCATAGACAAGTGGCTCAAGGAAATTCACAGGGTATGTCCACTTTGTCGGAGGGACATCTGTATATCTGATTCACTGTCAATGGAAAATTAA 1587 0.4329 MGSSSSKATSSCSSSPSSGSFRKARSKKGHGGLQSYCLGTTSGSHDDQVCDQSKVNGSGVIYSSCTKAHSNEMKSKSFRDNKTKTSDDTPSSIDLNEWAQTSISSNSSRTRSRSTRTSSTGSRFLSRFGLIPGNISFRLSRTSSVGSSRSCHVSSTSLSIFNNEDDLSLHPGPNGSLVNRNETQQSSGSSGNLQCNPSVSSIQNVVRDGNSSCEGLDINLFSPRTHAETENVEVRRNGAREPVERNFQYSRTLSVGRLRDRVLRQSTLSDVSFCPQQQEREARDTSEDNERQAGEGHSRVLPSFGNAIISSSLSGYPPPSMSNSLFNVQDNEVENSRSRESRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTKLHKYQEDAAQCYICLVEYEDGDSMRELPCHHQFHKTCIDKWLKEIHRVCPLCRRDICISDSLSMEN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2071 528 MobiDBLite consensus disorder prediction 280 295 - -
Prci5g2071 528 SMART ring_2 473 514 IPR001841 -
Prci5g2071 528 MobiDBLite consensus disorder prediction 174 195 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 1 49 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 88 121 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 273 301 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 1 22 - -
Prci5g2071 528 Pfam Ring finger domain 472 515 IPR001841 -
Prci5g2071 528 MobiDBLite consensus disorder prediction 72 87 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 163 195 - -
Prci5g2071 528 ProSiteProfiles Zinc finger RING-type profile. 473 515 IPR001841 -
Prci5g2071 528 MobiDBLite consensus disorder prediction 72 121 - -
Prci5g2071 528 MobiDBLite consensus disorder prediction 35 49 - -
Prci5g2071 528 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 527 - -
Prci5g2071 528 SUPERFAMILY RING/U-box 451 521 - -
Prci5g2071 528 FunFam Putative RING zinc finger domain superfamily protein 442 520 - -
Prci5g2071 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 520 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2071 Prci-Chr5 38134647 38140041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2071 46 522 C3H Transcription Factor Family AT5G45290 47.222 2.08e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2071 - - gmx:100786091 634.024