Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2070 ATGGGATCCAGTAGCAGCAAAGCCACTTCTTCTTGCAGTTCGTCGCCATCTTCTGGCAGTTTCCGGAAGGCTCGATCTAAGAAAGGGCACGGAGGACTTCAGTCGTATTGTCTGGGAACAACCTCTGGATCTCATGACGACCAGGTTTGTGATCAGAGTAAAGTAAATGGCAGTGGTGTCATATACAGCAGTTGCACCAAAGCACACTCAAATGAGATGAAATCAAAGTCTTTTAGAGACAATAAAACGAAAACATCTGATGACACGCCTTCCAGCATTGACCTTAATGAGTGGGCTCAAACAAGCATCTCCAGTAATTCCTCCAGAACTCGTAGCCGATCTACTCGTACTTCTTCAACTGGTAGTCGATTTCTTTCTCGGTTTGGCCTTATTCCTGGTAATATAAGCTTTAGACTTAGCAGAACCAGCAGTGTAGGGTCATCAAGGTCTTGCCATGTTTCTTCTACTTCATTGTCAATATTCAACAATGAAGACGACCTTAGTCTGCATCCAGGACCAAATGGCAGCTTGGTTAATAGAAACGAAACTCAACAATCATCAGGTTCGTCTGGCAACTTGCAGTGCAATCCCTCAGTTTCTTCCATTCAGAACGTGGTTAGAGATGGGAATAGTTCATGTGAAGGGCTGGATATAAACTTGTTTTCTCCAAGAACTCATGCTGAGACTGAAAATGTTGAAGTTCGGCGAAATGGAGCTCGAGAACCTGTTGAACGGAATTTCCAGTATAGCCGAACTCTAAGTGTTGGGAGGCTTCGTGATAGAGTTCTTCGTCAATCAACTTTATCTGATGTCAGCTTTTGTCCCCAGCAACAAGAAAGAGAAGCAAGGGATACTAGTGAGGACAATGAAAGACAAGCAGGGGAGGGACATTCAAGAGTATTACCATCTTTTGGTAATGCTATAATTTCTTCTTCTTTGTCTGGTTATCCTCCACCCAGTATGTCTAACTCCTTATTCAACGTGCAAGACAATGAGGTTGAGAATTCACGGTCTAGAGAATCTAGGTACCAAGATCTGCTGGAACACAGGTCCAACTTCCTTGAACGGAGAAGGAGGATAAGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCAGGTTTGAGAATCTATCTGGACATGACAGATCTTGTATCTTGTCTGGTCAACATAGAAATGGTCATTGTACATGCCGAATTGGTAGTCGTGATACTAGTTCAATTGATGATACTGGTACTAGAGCTAGCATATCAAGAATTGTAATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGCGGTTTTATCTTCTCGCCCTTCTGTGTCTTCCATTGGATCTGTTCCTGCGCCTAATGATGTTGTGGAGTCTTTGCCAGTCAGATTATACACAAAGTTGCATAAATATCAAGAGGATGCTGCCCAATGCTATATATGCCTAGTGGAATATGAGGATGGAGACAGCATGCGTGAGCTGCCTTGCCATCACCAATTTCATAAAACATGCATAGACAAGTGGCTCAAGGAAATTCACAGGGTATGTCCACTTTGTCGGAGGGACATCTGTATATCTGATTCACTGTCAATGGAAAATTAA 1608 0.4328 MGSSSSKATSSCSSSPSSGSFRKARSKKGHGGLQSYCLGTTSGSHDDQVCDQSKVNGSGVIYSSCTKAHSNEMKSKSFRDNKTKTSDDTPSSIDLNEWAQTSISSNSSRTRSRSTRTSSTGSRFLSRFGLIPGNISFRLSRTSSVGSSRSCHVSSTSLSIFNNEDDLSLHPGPNGSLVNRNETQQSSGSSGNLQCNPSVSSIQNVVRDGNSSCEGLDINLFSPRTHAETENVEVRRNGAREPVERNFQYSRTLSVGRLRDRVLRQSTLSDVSFCPQQQEREARDTSEDNERQAGEGHSRVLPSFGNAIISSSLSGYPPPSMSNSLFNVQDNEVENSRSRESRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRIGSRDTSSIDDTGTRASISRIVMLAEALFEVLDEIHQQSAVLSSRPSVSSIGSVPAPNDVVESLPVRLYTKLHKYQEDAAQCYICLVEYEDGDSMRELPCHHQFHKTCIDKWLKEIHRVCPLCRRDICISDSLSMEN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2070 535 MobiDBLite consensus disorder prediction 280 295 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 174 195 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 1 49 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 88 121 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 1 22 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 273 301 - -
Prci5g2070 535 SMART ring_2 480 521 IPR001841 -
Prci5g2070 535 MobiDBLite consensus disorder prediction 72 87 - -
Prci5g2070 535 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Prci5g2070 535 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 534 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 163 195 - -
Prci5g2070 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 527 IPR013083 -
Prci5g2070 535 SUPERFAMILY RING/U-box 458 528 - -
Prci5g2070 535 MobiDBLite consensus disorder prediction 72 121 - -
Prci5g2070 535 Pfam Ring finger domain 479 522 IPR001841 -
Prci5g2070 535 MobiDBLite consensus disorder prediction 35 49 - -
Prci5g2070 535 FunFam Putative RING zinc finger domain superfamily protein 449 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2070 Prci-Chr5 38134646 38140042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2070 46 529 C3H Transcription Factor Family AT5G45290 48.611 1.92e-119 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2070 - - gmx:100786091 654.825