Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2047 ATGGAGCCCAACGATTTGTTACAGGAGCTTCTTAACGTGGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATCGAACGACAAGAGAGGTTGCACGAGAGAAAATCGGAGCTCCAGGCTGTACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGGTGGTGCTCCAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGATCCTGAAGCAGATGATGTCAGGTTGAATATATTTGGCATCTCTACATATCGTGCAAACCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCAGCGGGTGGTGGCAAGAGCCTCTGCTACCAGTTTCCTGCTGTTCTGCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTGATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCAGCATACATGTTGACATCAACAACAACTAAGGAAGATGAGAAGTTCATATACAAGGTGCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTATGTCACGCCCGAAAAAATATCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCACTCTGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATTGAAATGTTGCACATTCCGAGATGTGTCAAATTTGTCAGCACGGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCCGAATTCATTCAAGAATCTTATCCAAACAAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAGTTAAGGGAGAGGGGAATTTCTGCAGATTATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGGAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCGCGGCAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATTGTGCGATACTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGACACTTCAAGATTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGTGAGGTGAAAGAACTGGACGTCTCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCAGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAACTTAAGCAGAAGGAACTAGATTTTGTGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTACTAGAGCGGATTTTGAAAGAAGAGTTTCAGCATACAGCATATGCGACAAATGCTTATGTTGCTGTGGGACCACTGGCCAAGCAAATATTGCTAGGAAAGAAGAATGTCAAGATTGAAATTTCTAGTGAACAGAGAATTAAGGCTGGTGTAAGATCAGTTAAACGTAGCCTTGGTTCCTCTGGTCTGGAGGTAAAGCTTGATGAGTTGAGGAAAGAATTGTCCTCCATTCATGGAGGAATACTCCCACACTCCGTCTTATCCACTCAACAAATCAGCCTCATAAGTTCTCAAAGGCCGAACTCACTAGAGCAGTTGGAGAAGATAATTGGAAGACTGAAGACAGAAAAGTATGGAGAGAGAATACTTGCGCATATTGAAATGTATTCTGATTCCAAGGCTCCTGGTGAGGGAAATGAACCAGGTACTGGGGCTAGAGCTGCAAAGAGGTCCAAGACCAAGAAACCTATTGTGCTTGTTGAGAGTAGTGAAGATGAAGCGTGA 2118 0.4254 MEPNDLLQELLNVEVEIQDVEDQIRALIERQERLHERKSELQAVLEACEESGNQVNGGAPSAVENWSGPFEWDPEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQFPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTTKEDEKFIYKVLDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHSGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAETLQDCNGMCDNCAFPSEVKELDVSSHAKLMVSLLQDMQENDQRLTMLQLVDKMKLKQKELDFVLKKEEMEQLILQLLLERILKEEFQHTAYATNAYVAVGPLAKQILLGKKNVKIEISSEQRIKAGVRSVKRSLGSSGLEVKLDELRKELSSIHGGILPHSVLSTQQISLISSQRPNSLEQLEKIIGRLKTEKYGERILAHIEMYSDSKAPGEGNEPGTGARAAKRSKTKKPIVLVESSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2047 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Prci5g2047 705 Gene3D - 280 476 IPR027417 -
Prci5g2047 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Prci5g2047 705 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Prci5g2047 705 SMART helicmild6 326 407 IPR001650 -
Prci5g2047 705 Pfam RecQ zinc-binding 419 475 IPR032284 -
Prci5g2047 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 657 - -
Prci5g2047 705 NCBIfam RecQ family ATP-dependent DNA helicase 82 507 IPR004589 GO:0004386|GO:0006310
Prci5g2047 705 Coils Coil 10 51 - -
Prci5g2047 705 Pfam HRDC domain 604 662 IPR002121 GO:0003676
Prci5g2047 705 CDD SF2_C_RecQ 280 416 - -
Prci5g2047 705 Pfam Helicase conserved C-terminal domain 301 406 IPR001650 -
Prci5g2047 705 Gene3D - 480 581 IPR036388 -
Prci5g2047 705 Gene3D - 47 279 IPR027417 -
Prci5g2047 705 SMART ultradead3 85 288 IPR014001 -
Prci5g2047 705 FunFam ATP-dependent DNA helicase 480 580 - -
Prci5g2047 705 FunFam ATP-dependent DNA helicase 599 669 - -
Prci5g2047 705 FunFam ATP-dependent DNA helicase 49 279 - -
Prci5g2047 705 CDD DEXHc_RecQ1 71 279 - -
Prci5g2047 705 MobiDBLite consensus disorder prediction 667 705 - -
Prci5g2047 705 FunFam ATP-dependent DNA helicase 280 476 - -
Prci5g2047 705 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Prci5g2047 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Prci5g2047 705 Gene3D HRDC domain 599 667 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2047 Prci-Chr5 37976424 38002526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2047 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.274 3.74e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2047 K10899 - gmx:100817635 1135.94