Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2046 ATGGAGCCCAACGATTTGTTACAGGAGCTTCTTAACGTGGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATCGAACGACAAGAGAGGTTGCACGAGAGAAAATCGGAGCTCCAGGCTGTACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGGTGGTGCTCCAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGATCCTGAAGCAGATGATGTCAGGTTGAATATATTTGGCATCTCTACATATCGTGCAAACCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCAGCGGGTGGTGGCAAGAGCCTCTGCTACCAGTTTCCTGCTGTTCTGCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTGATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCAGCATACATGTTGACATCAACAACAACTAAGGAAGATGAGAAGTTCATATACAAGGTGCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTATGTCACGCCCGAAAAAATATCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCACTCTGGTCGTCTCTCTCTAATTTCAATAGATTTGCCTTGCAGGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGATTACAAGAACCTTGGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATTGAAATGTTGCACATTCCGAGATGTGTCAAATTTGTCAGCACGGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCCGAATTCATTCAAGAATCTTATCCAAACAAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAGTTAAGGGAGAGGGGAATTTCTGCAGATTATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGGAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCGCGGCAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATTGTGCGATACTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGACACTTCAAGATTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGTGAGGTGAAAGAACTGGACGTCTCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCAGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAACTTAAGCAGAAGGAACTAGATTTTGTGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTACTAGAGCGGATTTTGAAAGAAGAGTTTCAGCATACAGCATATGCGACAAATGCTTATGTTGCTGTGGGACCACTGGCCAAGCAAATATTGCTAGGAAAGAAGAATGTCAAGATTGAAATTTCTAGTGAACAGAGAATTAAGGCTGGTGTAAGATCAGTTAAACGTAGCCTTGGTTCCTCTGGTCTGGAGGTAAAGCTTGATGAGTTGAGGAAAGAATTGTCCTCCATTCATGGAGGAATACTCCCACACTCCGTCTTATCCACTCAACAAATCAGCCTCATAAGTTCTCAAAGGCCGAACTCACTAGAGCAGTTGGAGAAGATAATTGGAAGACTGAAGACAGAAAAGTATGGAGAGAGAATACTTGCGCATATTGAAATGTATTCTGATTCCAAGGCTCCTGGTGAGGGAAATGAACCAGGTACTGGGGCTAGAGCTGCAAAGAGGTCCAAGACCAAGAAACCTATTGTGCTTGTTGAGAGTAGTGAAGATGAAGCGTGA 2082 0.428 MEPNDLLQELLNVEVEIQDVEDQIRALIERQERLHERKSELQAVLEACEESGNQVNGGAPSAVENWSGPFEWDPEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQFPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTTKEDEKFIYKVLDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHSGRLSLISIDLPCRRHIAVVNGVMTLDLITRTLATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAETLQDCNGMCDNCAFPSEVKELDVSSHAKLMVSLLQDMQENDQRLTMLQLVDKMKLKQKELDFVLKKEEMEQLILQLLLERILKEEFQHTAYATNAYVAVGPLAKQILLGKKNVKIEISSEQRIKAGVRSVKRSLGSSGLEVKLDELRKELSSIHGGILPHSVLSTQQISLISSQRPNSLEQLEKIIGRLKTEKYGERILAHIEMYSDSKAPGEGNEPGTGARAAKRSKTKKPIVLVESSEDEA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2046 693 Pfam HRDC domain 592 650 IPR002121 GO:0003676
Prci5g2046 693 NCBIfam RecQ family ATP-dependent DNA helicase 240 495 IPR004589 GO:0004386|GO:0006310
Prci5g2046 693 Gene3D HRDC domain 587 655 IPR044876 -
Prci5g2046 693 SMART helicmild6 314 395 IPR001650 -
Prci5g2046 693 FunFam ATP-dependent DNA helicase 268 464 - -
Prci5g2046 693 MobiDBLite consensus disorder prediction 655 693 - -
Prci5g2046 693 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 645 - -
Prci5g2046 693 Coils Coil 10 51 - -
Prci5g2046 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 410 IPR027417 -
Prci5g2046 693 CDD SF2_C_RecQ 268 404 - -
Prci5g2046 693 Pfam RecQ zinc-binding 407 463 IPR032284 -
Prci5g2046 693 ProSiteProfiles HRDC domain profile. 583 662 IPR002121 GO:0003676
Prci5g2046 693 Gene3D - 47 216 IPR027417 -
Prci5g2046 693 Pfam Helicase conserved C-terminal domain 289 394 IPR001650 -
Prci5g2046 693 Gene3D - 468 569 IPR036388 -
Prci5g2046 693 SMART ultradead3 85 276 IPR014001 -
Prci5g2046 693 Gene3D - 268 464 IPR027417 -
Prci5g2046 693 FunFam ATP-dependent DNA helicase 468 568 - -
Prci5g2046 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 434 IPR001650 -
Prci5g2046 693 Pfam DEAD/DEAH box helicase 91 194 IPR011545 GO:0003676|GO:0005524
Prci5g2046 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 262 IPR014001 -
Prci5g2046 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 501 IPR027417 -
Prci5g2046 693 FunFam ATP-dependent DNA helicase 587 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2046 Prci-Chr5 37976424 38002526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2046 303 409 Eukaryotic Initiation Factors Gene Family AT3G19760 20.561 1.06e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2046 K10899 - gmx:100817635 1055.43