Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci5g2045 | ATGGAGCCCAACGATTTGTTACAGGAGCTTCTTAACGTGGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATCGAACGACAAGAGAGGTTGCACGAGAGAAAATCGGAGCTCCAGGCTGTACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGGTGGTGCTCCAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGATCCTGAAGCAGATGATGTCAGGTTGAATATATTTGGCATCTCTACATATCGTGCAAACCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCAGCGGGTGGTGGCAAGAGCCTCTGCTACCAGTTTCCTGCTGTTCTGCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTGATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCAGCATACATGTTGACATCAACAACAACTAAGGAAGATGAGAAGTTCATATACAAGGTGCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTATGTCACGCCCGAAAAAATATCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCACTCTGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATTGAAATGTTGCACATTCCGAGATGTGTCAAATTTGTCAGCACGGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCCGAATTCATTCAAGAATCTTATCCAAACAAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAGTTAAGGGAGAGGGGAATTTCTGCAGATTATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGGAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCGCGGCAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATTGTGCGATACTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGACACTTCAAGATTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGTGAGGTGAAAGAACTGGACGTCTCCAATTTTGTGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTACTAGAGCGGATTTTGAAAGAAGAGTTTCAGCATACAGCATATGCGACAAATGCTTATGTTGCTGTGGGACCACTGGCCAAGCAAATATTGCTAGGAAAGAAGAATGTCAAGATTGAAATTTCTAGTGAACAGAGAATTAAGGCTGGTGTAAGATCAGTTAAACGTAGCCTTGGTTCCTCTGGTCTGGAGGTAAAGCTTGATGAGTTGAGGAAAGAATTGTCCTCCATTCATGGAGGAATACTCCCACACTCCGTCTTATCCACTCAACAAATCAGCCTCATAAGTTCTCAAAGGCCGAACTCACTAGAGCAGTTGGAGAAGATAATTGGAAGACTGAAGACAGAAAAGTATGGAGAGAGAATACTTGCGCATATTGAAATGTATTCTGATTCCAAGGCTCCTGGTGAGGGAAATGAACCAGGTACTGGGGCTAGAGCTGCAAAGAGGTCCAAGACCAAGAAACCTATTGTGCTTGTTGAGAGTAGTGAAGATGAAGCGTGA | 2010 | 0.4284 | MEPNDLLQELLNVEVEIQDVEDQIRALIERQERLHERKSELQAVLEACEESGNQVNGGAPSAVENWSGPFEWDPEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQFPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTTKEDEKFIYKVLDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHSGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAETLQDCNGMCDNCAFPSEVKELDVSNFVLKKEEMEQLILQLLLERILKEEFQHTAYATNAYVAVGPLAKQILLGKKNVKIEISSEQRIKAGVRSVKRSLGSSGLEVKLDELRKELSSIHGGILPHSVLSTQQISLISSQRPNSLEQLEKIIGRLKTEKYGERILAHIEMYSDSKAPGEGNEPGTGARAAKRSKTKKPIVLVESSEDEA | 669 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci5g2045 | 669 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 446 | IPR001650 | - | |
Prci5g2045 | 669 | Pfam | Helicase conserved C-terminal domain | 301 | 406 | IPR001650 | - | |
Prci5g2045 | 669 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | IPR014001 | - | |
Prci5g2045 | 669 | SMART | helicmild6 | 326 | 407 | IPR001650 | - | |
Prci5g2045 | 669 | Pfam | DEAD/DEAH box helicase | 91 | 259 | IPR011545 | GO:0003676|GO:0005524 | |
Prci5g2045 | 669 | MobiDBLite | consensus disorder prediction | 631 | 669 | - | - | |
Prci5g2045 | 669 | Coils | Coil | 10 | 51 | - | - | |
Prci5g2045 | 669 | Gene3D | - | 280 | 476 | IPR027417 | - | |
Prci5g2045 | 669 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 67 | 621 | - | - | |
Prci5g2045 | 669 | FunFam | ATP-dependent DNA helicase | 563 | 633 | - | - | |
Prci5g2045 | 669 | CDD | SF2_C_RecQ | 280 | 416 | - | - | |
Prci5g2045 | 669 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 128 | 423 | IPR027417 | - | |
Prci5g2045 | 669 | FunFam | ATP-dependent DNA helicase | 49 | 279 | - | - | |
Prci5g2045 | 669 | SMART | ultradead3 | 85 | 288 | IPR014001 | - | |
Prci5g2045 | 669 | Pfam | RecQ zinc-binding | 419 | 475 | IPR032284 | - | |
Prci5g2045 | 669 | NCBIfam | RecQ family ATP-dependent DNA helicase | 82 | 489 | IPR004589 | GO:0004386|GO:0006310 | |
Prci5g2045 | 669 | CDD | DEXHc_RecQ1 | 71 | 279 | - | - | |
Prci5g2045 | 669 | Pfam | HRDC domain | 568 | 626 | IPR002121 | GO:0003676 | |
Prci5g2045 | 669 | Gene3D | HRDC domain | 563 | 631 | IPR044876 | - | |
Prci5g2045 | 669 | Gene3D | - | 47 | 279 | IPR027417 | - | |
Prci5g2045 | 669 | ProSiteProfiles | HRDC domain profile. | 559 | 638 | IPR002121 | GO:0003676 | |
Prci5g2045 | 669 | FunFam | ATP-dependent DNA helicase | 280 | 476 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci5g2045 | Prci-Chr5 | 37976423 | 38002526 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci5g2045 | 84 | 421 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 19.274 | 2.70e-07 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci5g2045 | K10899 | - | gmx:100817635 | 1059.67 |