Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2043 ATGGAGCCCAACGATTTGTTACAGGAGCTTCTTAACGTGGAGGTTGAGATTCAAGATGTTGAAGATCAAATAAGGGCATTGATCGAACGACAAGAGAGGTTGCACGAGAGAAAATCGGAGCTCCAGGCTGTACTGGAAGCATGTGAAGAATCTGGAAACCAGGTCAATGGTGGTGCTCCAAGTGCTGTGGAAAATTGGTCTGGGCCATTTGAATGGGATCCTGAAGCAGATGATGTCAGGTTGAATATATTTGGCATCTCTACATATCGTGCAAACCAAAGAGAGATAATTAATGCCATCATGAGTGGAAGGGATGTTCTGGTGATTATGGCAGCGGGTGGTGGCAAGAGCCTCTGCTACCAGTTTCCTGCTGTTCTGCGTGATGGGATTGCTCTTGTTGTCAGTCCTTTGCTTTCTTTGATTCAGGATCAGGTTATGGGTTTGACTGCTTTAGGGATCCCAGCATACATGTTGACATCAACAACAACTAAGGAAGATGAGAAGTTCATATACAAGGTGCTGGATAAGGGTGAGGGGGATCTCAAAGTATTGTATGTCACGCCCGAAAAAATATCAAAGAGCAAGAGATTTATGTCAAAACTAGAAAAGTGTCATCACTCTGGTCGTCTCTCTCTAATTTCAATAGATGAGGCACATTGCTGTAGTCAATGGGGTCATGACTTTAGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAATTTCCTAATGTTCCATTAGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATTGAAATGTTGCACATTCCGAGATGTGTCAAATTTGTCAGCACGGTCAACAGACCAAACCTATTTTATATGGTAAAGGAAAAGTCATCTGTTGGTAAGGCGGTTATTGATGAAATTGCCGAATTCATTCAAGAATCTTATCCAAACAAGGAATCTGGGATAGTTTATTGTTTCTCCAGGAAAGAATGTGAACAGGTTGCAATGGAGTTAAGGGAGAGGGGAATTTCTGCAGATTATTACCATGCAGATATGGATGTACATGCTCGGGAAAAAGTACATATGCGGTGGAGCAATAGCAAGTTGCAGGTCATAGTTGGTACGGTGGCATTTGGCATGGGAATCAACAAACCAGATGTCAGATTTGTCATCCATCATAGCTTGAGCAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGGAGAGATGGACTCCCATCTGAATGTGTTCTCTACTTTAGACCTGGTGATGTGCCGCGGCAGAGTTCAATGGTTTTCTACGAAAACACAGGACTGCAGAATTTGTATGACATTGTGCGATACTGTCAGTCCAAAAAAAAATGTCGCCGCAGTGCCATTTTCCAGCACTTTGCTGAGACACTTCAAGATTGCAATGGGATGTGTGACAATTGTGCATTCCCAAGTGAGGTGAAAGAACTGGACGTCTCCAGCCATGCGAAGCTGATGGTTTCTTTGTTGCAAGATATGCAAGAAAATGATCAGAGATTAACAATGTTACAGTTGGTTGACAAAATGAAACTTAAGCAGAAGGAACTAGGTTGTTGTGCTCTCTCTTCAGTGCCTAAAAATTACCTCCCCCCACCCAAAAAAAAAAGCCTTTCCCTAGGCCATTTCTCCCATTCCGCTCTATTTTGTGTTGAAGAAAGAGGAAATGGAGCAGCTCATCTTACAGCTTTTACTAGAGCGGATTTTGTGGGTGATTTAGAGACAATGTTTCTTGATGTAGAAAGAAGAGTTTCAGCATACAGCATATGCGACAAATGCTTATGTTGCTGTGGGACCACTGGCCAAGCAAATATTGCTAGGAAAGAAGAATGTCAAGATTGA 1857 0.4243 MEPNDLLQELLNVEVEIQDVEDQIRALIERQERLHERKSELQAVLEACEESGNQVNGGAPSAVENWSGPFEWDPEADDVRLNIFGISTYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQFPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTTKEDEKFIYKVLDKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHSGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKAVIDEIAEFIQESYPNKESGIVYCFSRKECEQVAMELRERGISADYYHADMDVHAREKVHMRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKKKCRRSAIFQHFAETLQDCNGMCDNCAFPSEVKELDVSSHAKLMVSLLQDMQENDQRLTMLQLVDKMKLKQKELGCCALSSVPKNYLPPPKKKSLSLGHFSHSALFCVEERGNGAAHLTAFTRADFVGDLETMFLDVERRVSAYSICDKCLCCCGTTGQANIARKEECQD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2043 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Prci5g2043 618 Gene3D - 280 476 IPR027417 -
Prci5g2043 618 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 520 - -
Prci5g2043 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Prci5g2043 618 SMART helicmild6 326 407 IPR001650 -
Prci5g2043 618 Pfam RecQ zinc-binding 419 475 IPR032284 -
Prci5g2043 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Prci5g2043 618 Coils Coil 10 51 - -
Prci5g2043 618 Pfam Helicase conserved C-terminal domain 301 406 IPR001650 -
Prci5g2043 618 CDD SF2_C_RecQ 280 416 - -
Prci5g2043 618 FunFam ATP-dependent DNA helicase 280 476 - -
Prci5g2043 618 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Prci5g2043 618 SMART ultradead3 85 288 IPR014001 -
Prci5g2043 618 Gene3D - 480 531 IPR036388 -
Prci5g2043 618 FunFam ATP-dependent DNA helicase 49 279 - -
Prci5g2043 618 CDD DEXHc_RecQ1 71 279 - -
Prci5g2043 618 Gene3D - 47 279 IPR027417 -
Prci5g2043 618 NCBIfam RecQ family ATP-dependent DNA helicase 82 507 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2043 Prci-Chr5 37976419 38001291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2043 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 18.820 1.63e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2043 K10899 - gmx:100817635 944.11