Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2040 ATGTCGCTTCTTAGCAGATTCTTTTACAGGAGACCACCTGATGGTTTGCTGGAATTTGTCGATAGAATTTACGTTTTCGATTCCTGCTTTTCCACTGAGGCATTGCTTGATGGAATGTACCAAATATATTTACATGAAATTATTACCGAGTTACACGAAGAATTCCCGGACTCTTCCTTTTTCGCATTCAATTTTCGTGAAGGAGAGAAACGTAGTCAATTTGCTGAAATTCTTTGTGAATACGATGTTACTGTGATGGATTATCCGCGACAGTATGAGGGTTGCCCTATTCTTCCGGTGTCTTTGGTTCAACATTTTCTTCGTGTCTGTGAGAGTTGGCTTTCACTTGGGAATCAACAGAATGTTATCCTTCTCCACTGTGAGAGAGGAGGTTGGCCTCTCTTGGGGTTTCTTTTAGCCAGCTTTCTAATTTATAGAAGACTGCACAGTGGTGAACGGAAGACACTTGAAATGGTGCATAGAGAGGCACCCAAAGGCTTCTTACAGCTATTGTCGCCTTTGAACCCGTTGCCATCTCAGCTTCGTTATGTTCAGTATGTAGCAAGAAGGAACATAGCTCCTGAGTGGCCTCCACCTGAGAGAGCTCTCCTAGATTGTGTCATTCTCAGAGCCATTCCTAGTTTTGATTCCCATAATGGATGCAGACCCATGATCCGCATTTTTGGTAGAAATTTTCTCAGCAAGGGTGGCCTTTCTACTCAGATGCTCTACTCCATGCACAAGAAAAAGAAATCTTTGAGGCACTACCGTCAGGCAGAGTGTGATGTGATCAAGATTGACATTCAATGTTTAGTACAAGGAGATGTGGTATTGGAATGTGTCCATTTGGACTTGAATCCTCAAAGGGAAGTAATGATGTTTCGCATAATGTTCAACACAGCATTTATTCGATCCAACATATTGATGCTGAATGCTGAAAACCTGGACATTCTCTGGGATTCAAAGGAGCGGTACCCAAAAGGCTTCCGAGCTGAGGTTTTGTTTGGGGAGGTTGAAACCATATCTCCTCCAAAAGCCCCAACAACTGTGTTAAATGGCGAGGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCAAGGGTTCAAGAACTTTTTAGTGGTGTGGAGTGGCTTGACAGTGGTGAAGATGCTGCAGTCTGGTTGCTTAAACAACTTTCTGTGTTAAATGATGTCAAAGAGCTATCAAGGTTGCAAGGTAAGTCAAGTTGGTACTCATCACCTGCTGACTCTGAAGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAAGCCTTTGAGCATAAGTCTTCTACTGATATTTCAAAGTTATTGGCACCTGACAACCCTCATTCAATCCATTTAGATTTTGAAAGTGATGGTAGAAATAATGTACATCTTACTTCAGAACCTCCAGATCCATCGACTGAAACTGTTCCACTGTCTCATCATGCTCTTAGTAATGAATATCCTCACAATTCATCTCCATCATCACCACCGTCACCACCTCCTCCACATCTTTCTAAAATCAGTGGAGATCCTTCCACATCTTCTACATCATCATCAGCAAATTGCAAGGGCCCAATACCGCCCCCTCCTCCACCTCCTCCACCCCCATTTGTCTCTTGCAAAACTTTGCCACCATCCCCACCAACCCTACCAATCCACTTCAATCAACAAACCTTGCTGCCGCCTCCTCCTCCTCCCCCACCACCTCTCCCACCCACAATAGGGAGTAAAATTAACGAGGTGCCGCAGAAATTGCTGCCGCCACCACCGCCTCCTCCACCACCAATGCCACTGGCACTATTAAACATTTCAACTTCATATAATACTAAGCCCCTTCGAGTAGCAAGACCTCCTCCACCACCACCTCCTCCTCCCTCTACTTCTGCCCTAGCTCATAATGCTCCTAGACCACCTCCACCACCTCCTATGGCAAAACTGCCAAATGCACCTCCTCTACCACCACCACCTAGTCAAGGCACAATACCACTTGCACCTTTACGACCAAGTCAAGCTCCACCTCCACCACCTAGCAAAAGTGCAATGCATCCTTCACCTTCCCCTCCTCCTCCACCAGCACCTACTCGAGGCACATTGCCACCTCCCCCTCCTCCACCACCACCACTTGGCCGAGGTGCAATGCCACCTCCACCTCCACCTCCTCCACCGCCGCCACTTGGTCGTGACACAAAGCCACCTCCACCACCACCTCGTCAAGGTGCAACACCTCCTCCACCTCCACCACCACCTTTTCGAATTGCAGCACCTCCCCCACCTCCACCTCCTGGTCAAGGTGCAGCACCTCCCCTACCTCTAGTACCTAGTCAGGGTGTGGGTGCACCACCTCCCCCTCCCCCTCTAGTATCTAGGGGATCTAATGTGCCACTGCCACCACCACCCACTGCCAAAGGCAAGCCTTCTTTAGCATCAACAAATATTGGAAGAGGTCGAGGTTCTAGTGGGACTGCTAATGCCCCTAAGAAAGCTTCATTAAAGCCCCTACATTGGGTGAAAGTTACACGAGCAATGAAAGGGAGTCTATGGGCTGATTCAGAGAAACAAGATAATCAATCAAGGCCCCCTGAAATTGATATATCAGAACTCGAGAGTCTGTTTTCAGCAGCGTCTGCTTCTGATGTGAGCAGTACTAAAGGTGCAGGTCGGCGAGGTTCAAATATCAATAAACCTGAGAAAGTTCAATTGATTGACTTGCGAAGAGCTTATAATTGTGAGATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGACATGCTTAATGCAGTTCTGGCATTAGATTCTTCTGCTTTAGACATTGATCAGGTTGAGAATCTTATTAAGTTCTGCCCCACAAAGGAAGAAATGGAAATGTTGAAGAATTACGCTGGGAACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTCATGGAGCTGATGAAGGTTCCACGAGTAGAAGCTAAATTACGAGTTTTTGCTTTTAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATTAAATTTGAACACAATCAATTATGCTGCTAGGGAGGTGAAAGAATCTTTGAAGTTGCGTCAAATAATGCAAACTATTCTTACTCTGGGTAATGCCTTAAATCAGGGAACAGCACGAGGATCTGCAGTAGGATTCAAATTAGATAGCCTTCTTAAATTATCTGATACTCGTGCGAGGAATAACAAAATGACTTTGATGCATTATTTGTGTAAGCTTCTTTCTGAGAAAATGCCAGAATTGCTAGATTTTGGCAAGGATCTTGTTCATTTGGAAGCAGCTTCAAAGATCCAACTAAAAGCATTGGCTGAAGAGATGCAAGCGGTTAGTAAAGGTCTGGAAAAAGTTGAGCAAGAACTTACTGCTTCAGAAAATGATGGTGTCATATCTGCAGGCTTCCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGAAGTGAGGTCACTCATATCATTGTATACTGAAGTGGGAAGAAATGCAGATTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATCCTGGTTGTCTTCGTGAAGATGTTCAACAAATCAAGGGAGGAGAATGAAAGGCAGGCAGACGCCGAAAAGAAGAAATTAGAGAAAGAAGCCATGAAAGAACAGCGAACACCTGTAAATACAAATTTAAAAAAAGATGTACACTAG 3711 0.4462 MSLLSRFFYRRPPDGLLEFVDRIYVFDSCFSTEALLDGMYQIYLHEIITELHEEFPDSSFFAFNFREGEKRSQFAEILCEYDVTVMDYPRQYEGCPILPVSLVQHFLRVCESWLSLGNQQNVILLHCERGGWPLLGFLLASFLIYRRLHSGERKTLEMVHREAPKGFLQLLSPLNPLPSQLRYVQYVARRNIAPEWPPPERALXLDCVILRAIPSFDSHNGCRPMIRIFGRNFLSKGGLSTQMLYSMHKKKKSLRHYRQAECDVIKIDIQCLVQGDVVLECVHLDLNPQREVMMFRIMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVETISPPKAPTTVLNGEEKGGLPIEAFSRVQELFSGVEWLDSGEDAAVWLLKQLSVLNDVKELSRLQGKSSWYSSPADSEDENNESSTADSSDEAFEHKSSTDISKLLAPDNPHSIHLDFESDGRNNVHLTSEPPDPSTETVPLSHHALSNEYPHNSSPSSPPSPPPPHLSKISGDPSTSSTSSSANCKGPIPPPPPPPPPPFVSCKTLPPSPPTPXPIHFNQQTLLPPPPPPPPPLPPTIGSKINEVPQKLLPPPPPPPPPMPLALLNISTSYNTKPLRVARPPPPPPPPPSTSALAHNAPRPPPPPPMAKLPNAPPLPPPPSQGTIPLAPLRPSQAPPPPPSKSAMHPSPSPPPPPAPTRGTLPPPPPPPPPLGRGAMPPPPPPPPPPPLGRDTKPPPPPPRQGATPPPPPPPPFRIAAPPPPPPPGQGAAPPLPLVPSQGVGAPPPPPPLVSRGSNVPLPPPPTAKGKPSLASTNIGRGRGSSGTANAPKKASLKPLHWVKVTRAMKGSLWADSEKQDNQSRPPEIDISELESLFSAASASDVSSTKGAGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMLNAVLALDSSALDIDQVENLIKFCPTKEEMEMLKNYAGNKEMLGKCEQFFMELMKVPRVEAKLRVFAFKITFSSQVNDLRLNLNTINYAAREVKESLKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLSEKMPELLDFGKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGVISAGFRKVLKNFLDIAEAEVRSLISLYTEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEAMKEQRTPVNTNLKKDVH 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2040 1238 Coils Coil 1106 1133 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 809 830 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 496 510 - -
Prci5g2040 1238 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 588 604 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 852 872 - -
Prci5g2040 1238 PANTHER FORMIN-J 723 1226 - -
Prci5g2040 1238 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Prci5g2040 1238 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 187 IPR029021 -
Prci5g2040 1238 Pfam Formin Homology 2 Domain 829 1200 IPR015425 -
Prci5g2040 1238 ProSiteProfiles Formin homology-2 (FH2) domain profile. 825 1225 IPR015425 -
Prci5g2040 1238 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Prci5g2040 1238 Coils Coil 1200 1227 - -
Prci5g2040 1238 Gene3D - 197 342 - -
Prci5g2040 1238 SMART PTEN_C2_2 198 338 IPR014020 -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 1205 1238 - -
Prci5g2040 1238 SUPERFAMILY Formin homology 2 domain (FH2 domain) 900 1226 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 465 495 - -
Prci5g2040 1238 Gene3D Formin, FH2 domain 825 1211 IPR042201 -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 618 808 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 527 580 - -
Prci5g2040 1238 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Prci5g2040 1238 SMART it6_source 469 1236 IPR015425 -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 408 833 - -
Prci5g2040 1238 FunFam Formin-like protein 824 1211 - -
Prci5g2040 1238 MobiDBLite consensus disorder prediction 511 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2040 Prci-Chr5 37942404 37952812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2040 781 1209 FH2 protein (formin) Gene Family AT1G31810 78.322 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2040 - - pcin:129311237 1186.4