Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g2000 ATGGCTTCCTCATTGAATCACTCTTCGTATGTGTCGAAACTTGAAAGCAGTAAGCATAAGAACGACCACAACAAGAACAAGGACATCGAAATGAACTCTCCGCCGATGTGGACGGCGGTCCAGCCACCGTTCACGGTGGCGCAATGGCAGGAGCTTGAACACCAAGCTCTCATCTTTAAGTACCTCAAGGCTGGACTGGCCGTCCCCCTCGACCTCCTCGTTCCTATTCGCAAGAGTCTCGAATTGATGCCGCCAAAGCTCGTTCATCACCCGTCTTTGGGTTATTGCTCGTATTACGGGAAGAAGATCGACCCAGAGCCGGGCAGGTGTCGAAGAACGGATGGGAAGAAGTGGAGATGCTCGAGAGATGCGCATCCGGACTCCAAGTACTGTGAGCGGCACATGATACGCCGTCGTTACCGTTCAAGAAAGCCTGTGGAATCGCAACAAGCTGCTTCTCAGTCTTCGTCCAGTTCTGCATCGGACGTTGCTGCTTCTGGGAGCAGAAGTGGCTCTGGAAGCTTCCAGAGCTTGCCCTTGCACGGAAATGGTGCTCGTGAGGATTTGAACCTTGGAAACAACTTATCACAGCAGATACAGTCTCTTCCCGGTGAGATTAGCAGGAAAGATTGCAGGTTCGGGCTGAATTCTGAGGCAGAGGAGCACAACTTTTTGCAGAAAGGCTTGGGAAGCACAAGCTATCTTGGTTTTGACTCTACCTCGGACACCATGTGGTCTCATATCTCACAAGTTCCCTCACAACTTGTCTTGGAGTCAAGAAATAGTTCTACTATTGTTAGCAGCTGCTTCCAGCTGGGGACGATGCGGGATGCTGAGCCATTGAACATCAATGCTGCAAGATCAAAGCAACATTTTTATGGTGATCAGCTAAGTTTGGCAGGGTGTTTGAAACAGGAAAATCAGTCCCCGCTGACTTTCTCAACCGACTGGCTCTGGAAGGACTCAAGCTCCCCCTCTGTTGAGTATAGACCCAATAAGGATTCTAGCTGTAACCCTGATAGTATGAATCCCTTTCAGTGA 1041 0.5005 MASSLNHSSYVSKLESSKHKNDHNKNKDIEMNSPPMWTAVQPPFTVAQWQELEHQALIFKYLKAGLAVPLDLLVPIRKSLELMPPKLVHHPSLGYCSYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCERHMIRRRYRSRKPVESQQAASQSSSSSASDVAASGSRSGSGSFQSLPLHGNGAREDLNLGNNLSQQIQSLPGEISRKDCRFGLNSEAEEHNFLQKGLGSTSYLGFDSTSDTMWSHISQVPSQLVLESRNSSTIVSSCFQLGTMRDAEPLNINAARSKQHFYGDQLSLAGCLKQENQSPLTFSTDWLWKDSSSPSVEYRPNKDSSCNPDSMNPFQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g2000 346 ProSiteProfiles QLQ domain profile. 43 78 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci5g2000 346 ProSiteProfiles WRC domain profile. 104 148 IPR014977 -
Prci5g2000 346 MobiDBLite consensus disorder prediction 13 29 - -
Prci5g2000 346 MobiDBLite consensus disorder prediction 1 33 - -
Prci5g2000 346 PANTHER GROWTH-REGULATING FACTOR 5 18 329 IPR031137 GO:0005634|GO:0006351|GO:0032502
Prci5g2000 346 MobiDBLite consensus disorder prediction 322 346 - -
Prci5g2000 346 MobiDBLite consensus disorder prediction 141 181 - -
Prci5g2000 346 MobiDBLite consensus disorder prediction 146 179 - -
Prci5g2000 346 SMART QLQ_2 42 78 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci5g2000 346 Pfam WRC 105 147 IPR014977 -
Prci5g2000 346 Pfam QLQ 43 77 IPR014978 GO:0005524|GO:0005634|GO:0006355
Prci5g2000 346 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g2000 Prci-Chr5 37711300 37714773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g2000 38 150 GRF Transcription Factor Family AT3G13960 58.120 3.46e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Prci5g2000 WRC 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g2000 - - pcin:129310568 665.611