LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci5g1970	ATGGCAGCTTGCACAGTGTACACAACAACACAATCCCTCAGCACAAAATGCTGGATCTCATCTCCATCAAAATCACATTTGGGTTATTTTCCCCAGAAACAGCAGGTTGTTATCTACAGGAGGAGGAGGAGGAGGAGGAAAGCCACATGTGTGATAACATGTGCAGCAGCAGGTGATCATGGTCAGACTATAGTGATTGGTCTAGCTGCAGATTCAGGCTGTGGGAAGAGTACCTTCATGAGAAGACTAACCAGTGTGTTTGGAGGAACAGCAGAACCACCAAAAGGAGGAAACCCAGATTCTAACACTCTCATTAGTGACACAACAACAGTCATTTGCTTGGATGACTATCATTCATTAGACAGATATGGAAGAAAAGAGAAAGGAGTGACCGCACTTGATCCTAGAGCCAACAATTTTGATCTCATGTATGAGCAAGTTAAGGCTCTTAAGGATGGATTTGCTGTGGAGAAACCCATTTACAATCATGTCACTGGTCTCTTGGATCCTCCTGAGCTCATCAAGCCTCCCAAAATCTTGGTCATTGAAGGTTTGCATCCAATGTTTGATCCACGGGTGAGAGAACTGTTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTCGACACACCCTTGAAAGCATCAAATCTAGCATTGAAGCTCGGAAGCCTGATTTTGAAGCCTATATTGATCCTCAGAAGCAATATGCAGATTCAGTGATAGAAGTGTTGCCAAGCCAGCTCATTCCAGATGATAATGAGGGAAAGGTTTTAAGAGTGAGGTTAATACAGAAAGAAGGGGTTAAGCATTTTAGCCCTGCTTACTTGTTTGATGAAGGGTCTACCATTTCCTGGATACCATGTGGGAGGAAGCTAACCTGCTCTTATCCTGGCATCAAATTCTTTTATGGACCTAAGACTTACTATGGTCATGAGGTATCAATTGTAGAGATGGATGGGCAATTTGACAAACTAGATGAACTGATTTATGTTGAGAGCCATCTCAGTAACCTCTCAACAAAATTCTATGGGGAGGTTACACAACAGATGCTGAAACATGCTGACTTCCCAGGAAGCAACAATGGGACAGGTCTTTTCCAGACCATAATTGGGTTGAAGATTAGAGATTTATATGAGCAAATAATAGCCAGCAGGGCTAAGGCTCCAGTAGGAGCAGCAAAAGCCTAG	1230	0.4317	MAACTVYTTTQSLSTKCWISSPSKSHLGYFPQKQQVVIYRRRRRRRKAXTCVITCAAAGDHGQTIVIGLAADSGCGKSTFMRRLTSVFGGTAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRYGRKEKGVTALDPRANNFDLMYEQVKALKDGFAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERRHTLESIKSSIEARKPDFEAYIDPQKQYADSVIEVLPSQLIPDDNEGKVLRVRLIQKEGVKHFSPAYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPKTYYGHEVSIVEMDGQFDKLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIIGLKIRDLYEQIIASRAKAPVGAAKA	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci5g1970	410	Gene3D	-	61	294	IPR027417	-
	Prci5g1970	410	FunFam	Phosphoribulokinase	61	291	-	-
	Prci5g1970	410	Pfam	Phosphoribulokinase / Uridine kinase family	66	264	IPR006083	GO:0005524\|GO:0016301
	Prci5g1970	410	CDD	PRK	66	355	-	-
	Prci5g1970	410	PANTHER	URIDINE KINASE	60	314	-	-
	Prci5g1970	410	PRINTS	Phosphoribulokinase family signature	233	256	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Prci5g1970	410	PRINTS	Phosphoribulokinase family signature	215	232	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Prci5g1970	410	PRINTS	Phosphoribulokinase family signature	180	198	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Prci5g1970	410	PRINTS	Phosphoribulokinase family signature	71	88	IPR006082	GO:0005524\|GO:0005975\|GO:0008974
	Prci5g1970	410	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	63	334	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci5g1970	Prci-Chr5	37553188	37555929	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci5g1970	56	256	PRT Gene Family	AT1G55810	26.570	9.36e-16	77.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci5g1970	K00855		-	gmx:100777515	703.745