Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1966 ATGGGTAAGAAACAACATGATACCGCCAGAGCCAGCGAGCCAGTAGCCGAGGAAGACCCAGACTACCGGGCGACCAAAGCAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAATAAGCAAAACGAAGATAGTCCCAAAAGAAAGCTTGAGGAAGTTGAGGTCCAGGATAGCGCAGAACCGAAATCGAAGAAGAGTAAGAAGGATAAGAAGTCGAGAAAGAACGCGGAGAAAACCGTAGCTGACGTAACAGATGACGCCGAGAACGGCGGAGAGGATGAGTCGGTGAGAGACGAGCACGTGGTGGTTACTGGGAAGAATATTAAGGACGAGAAGTATACGCCTACGAGGACTTTTGCCGCATCAGGGCTTCCAAAGGAAGTATTGGAGTGCTGCAAAAGTTTTGAAAGGCCGTCCCCTATTCAGTCCCGGGCGTGGCCTTTCTTGTTGGATGGTCGTGATTTAATTGGCATTGCGGCTACCGGGTCAGGAAAAACATTAGCTTTTGGAATACCAGCTATGATGCATGTTTTGAGCAAGCGCAAGAATAAAGATTCAAAGGGTCGGAATCCTCTTTGCCTTGTGCTCTCTCCCACCAGGGAGCTGGCTCAACAAATTTCAGATGTTATATGTGATGCTGGAAGGTCTTGTGGTGTGGAATCTATTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATATCTTCATTAAAATCTGGAATTGACATTGTCATTGGAACTCCTGGTCGTATTACGGATCTAATTGAAATGGGTGTTTGTTCCCTGAAAGAGGTTTCTTTTGTGGTGCTTGATGAAGCAGATCGAATGCTTGACATGGGATTTGAGCAAGCAGTTCGCTCCATACTGGGTCAGACTTGTTCTGTTCGTCAAATGGTGATGTTCAGTGCTACATGGCCTCTACCAGTCCATCACTTAGCTCAAGAATTTATGGATCCTAACCCTGTGAAAGTTGTTGTAGGATCAGAGGACTTAGCTGCGAATCATGATGTTATGCAGATAGTTGAGGTCTTAGATGATCGTTCACGAGACAGACGCCTGGTAGCTTTGCTAGAAAAATACCACAAATCTCAGAGGAATAGAGTATTGGTTTTTGTCCTATACAAATTGGAAGCTTCACGAGTTGAAAAGATGCTTCATCAAGGGGGTTGGAAGGTTGTCTCAATACATGGGGATAAGGCACAATATGAACGTACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCCACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTGGTGATCAACTACAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGAGGACAGGACGAGCCGGGAAGAAAGGTGTTTCCCATACGTTTTTCACGCAGCAGAATAAGGGACTTGCTGGGGAGCTAGTGAATGTTTTAAAAGAAGCAAATCAAATTGTGCCTGATGCTCTTTTGAAGTTTGGCACGCACGTAAAGAAAAAGGAGTCCAAGCTGTACGGAGCTCACTTCAAGGAGATTTCTGCTGATGCCCCAAAGTCAAAGAAGATCACATTTGACGACTCTGACGAAGATTAA 1605 0.4474 MGKKQHDTARASEPVAEEDPDYRATKAEKKKKKKKKKNKQNEDSPKRKLEEVEVQDSAEPKSKKSKKDKKSRKNAEKTVADVTDDAENGGEDESVRDEHVVVTGKNIKDEKYTPTRTFAASGLPKEVLECCKSFERPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAMMHVLSKRKNKDSKGRNPLCLVLSPTRELAQQISDVICDAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRITDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQAVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDRRLVALLEKYHKSQRNRVLVFVLYKLEASRVEKMLHQGGWKVVSIHGDKAQYERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTQQNKGLAGELVNVLKEANQIVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSKKITFDDSDED 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1966 534 SMART helicmild6 378 459 IPR001650 -
Prci5g1966 534 Gene3D - 70 325 IPR027417 -
Prci5g1966 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 322 IPR014001 -
Prci5g1966 534 CDD SF2_C_DEAD 336 468 - -
Prci5g1966 534 MobiDBLite consensus disorder prediction 42 64 - -
Prci5g1966 534 MobiDBLite consensus disorder prediction 1 96 - -
Prci5g1966 534 Pfam Helicase conserved C-terminal domain 350 459 IPR001650 -
Prci5g1966 534 CDD DEADc 134 323 - -
Prci5g1966 534 FunFam ATP-dependent RNA helicase RhlB 325 502 - -
Prci5g1966 534 Coils Coil 22 44 - -
Prci5g1966 534 Gene3D - 326 501 IPR027417 -
Prci5g1966 534 MobiDBLite consensus disorder prediction 1 26 - -
Prci5g1966 534 Pfam DEAD/DEAH box helicase 139 306 IPR011545 GO:0003676|GO:0005524
Prci5g1966 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 498 IPR001650 -
Prci5g1966 534 MobiDBLite consensus disorder prediction 27 41 - -
Prci5g1966 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 472 IPR027417 -
Prci5g1966 534 SMART ultradead3 133 339 IPR014001 -
Prci5g1966 534 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 494 - -
Prci5g1966 534 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 142 IPR014014 GO:0003724
Prci5g1966 534 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1966 Prci-Chr5 37524312 37531333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1966 114 467 Eukaryotic Initiation Factors Gene Family AT3G19760 33.427 7.10e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1966 K14811 - gmx:100305353 822.002