Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1924 ATGAGCTTTCAGGATATTGAAGCTGGCCGGCCTTTCGCTCCCCGGCGAAACCTCGGCAATCCCAACCAAGATCCTACCCAGGCCGTGGCTTCTGGTATCTTTCAGATCAACACCGCTGTTTCCACGTTTCAGAGGCTCGTCAATACCCTCGGAACCCCTAAAGACACGCTCGAGCTACGCGAGAAATTGCACAAGACAAGACTCAATATCGGGCAATTGGTGAAGGATACATCTGCTAAACTCAAGCAGGCTAGTGAAATAGATCACCATGTTGAAGTTAGCGCAAGTAGGAAGATAGCCGATGCTAAACTTGCAAAAGATTTTCAGGCAGTTTTGAAAGAATTTCAGAAGGCACAGCAGCTTGCAGCCACAAGGGAAACAGCCTACACTCCTTTTGTTTCACAAGCAAGTCTTCCTTCCAGTTATACAGCCAGTGAGGTGGATGTTAGTTCTGATCAGACTTCAGAACGGCGTGCTCTTGTGGAATCCAGAAGGCAAGAGTTGTTATTATTGGATAATGAGATTGCCTTCAATGAAGCTATAATTGAGGAACGTGAGCATGGCATTCAAGAAATCCAACAGCAAATTGGTGAAGTAAACGAGATTTTTAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAGTCATAATTGATGATATTGGATCCAATATTGAAGCCTCCCACTCGGCAACTTCAGAAGCAAAATCTCAACTCGTGAAAGCTGCAAAGATCCAAAGATCAAATTCGTCCCTGACGTGCTTGCTCTTGGTGATCTTCGGGGTTGTGCTCCTCATCGTGATCATAGTTCTTGCTGCCTAG 819 0.4567 MSFQDIEAGRPFAPRRNLGNPNQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTLELREKLHKTRLNIGQLVKDTSAKLKQASEIDHHVEVSASRKIADAKLAKDFQAVLKEFQKAQQLAATRETAYTPFVSQASLPSSYTASEVDVSSDQTSERRALVESRRQELLLLDNEIAFNEAIIEEREHGIQEIQQQIGEVNEIFKDLAVLVHEQGVIIDDIGSNIEASHSATSEAKSQLVKAAKIQRSNSSLTCLLLVIFGVVLLIVIIVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1924 272 CDD SynN 23 148 IPR006011 GO:0016020
Prci5g1924 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Prci5g1924 272 Pfam SNARE domain 216 267 IPR000727 -
Prci5g1924 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Prci5g1924 272 Gene3D - 20 135 - -
Prci5g1924 272 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Prci5g1924 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Prci5g1924 272 PANTHER SYNTAXIN 26 263 IPR045242 -
Prci5g1924 272 MobiDBLite consensus disorder prediction 1 26 - -
Prci5g1924 272 FunFam Syntaxin-22 like 172 272 - -
Prci5g1924 272 FunFam Syntaxin-22 like 20 133 - -
Prci5g1924 272 SMART tSNARE_6 174 241 IPR000727 -
Prci5g1924 272 CDD SNARE_Qa 182 240 - -
Prci5g1924 272 Gene3D - 174 272 - -
Prci5g1924 272 SMART SynN_4 13 127 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1924 Prci-Chr5 37237109 37240421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1924 1 260 SNARE and Associated Proteins AT5G46860 76.538 1.07e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1924 - - gmx:547656 382.489