Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1912 ATGGGTAGGCCACCATGTTGTGAGGAGACCGGTGTGAAGAGAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTATCGCTTATATCAGTAAACATGGCAGTGGAAGTTGGAGATCAGTTCCAAAGCATGCGGGCCTCAACAGATGCGGCAAGAGCTGCAGGCTACGCTGGACAAACTATCTTAGACCAGACATCAAGAGAGGAAAATTCACTGGAGAAGAGGAGCGATTGATCATCAACCTCCATTCGGTTCTTGGGAACAAGTGGTCGAATATTGCAATGCATCTTCCAGGGAGGACTGACAATGAGATAAAGAATTTCTGGAACACCAATCTGAGGAAGAAGCTTCTCCGGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCATCTCATGAATGTCTCGCAGAGCCCTTGGAGCCTTGCAGGTCTGGGTTTACACCAACCAGATTTAACTCATCACTTAGCCCAAATCCAACTCCTGCAGAACCTGTTTCAATTCATGAATGGCAGTAACATGCAGAGTATTCTCCCACTCTTGGGTAATCAAAGTTTGATCAATAACCCAATTATGGAAGCAAGTATAAATGGTGCAAACAGCACTCTTCCCAATAACCAAGAGTGTTTCTCGGGAGACCAAGAATTATATGCGAGCACTGCTCTATTTCCACCAGCACCAAGTGAATCACGCCAGGATATTTCAGAATCATGGACAGACCCAGGAGGAGCATTGGATCAAGAAGTTTTGGGTATTAACAATAGTATTAGTAGAACTTCATCACATGAAATGAATCTACAGGCTGCTGAAAATCCATTTCCTGCAACTTGTTCAGGCAATTTCAACCAAATGGATTGCTCTAATACTGATGAAATGTCCAATATGCGTTCATCACCATCCACAGTCTTTGATGCTTGGGAAAAACTCTTGGAAGACGATACAAGTGATTCCTACTGGAAAGAACTTTTAGAATTGACGTCTTCCAATTCGCCCATTTCGTGGTAG 1014 0.4418 MGRPPCCEETGVKRGPWTPEEDEKLIAYISKHGSGSWRSVPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFTGEEERLIINLHSVLGNKWSNIAMHLPGRTDNEIKNFWNTNLRKKLLRMGIDPETHKPRTDLKHLMNVSQSPWSLAGLGLHQPDLTHHLAQIQLLQNLFQFMNGSNMQSILPLLGNQSLINNPIMEASINGANSTLPNNQECFSGDQELYASTALFPPAPSESRQDISESWTDPGGALDQEVLGINNSISRTSSHEMNLQAAENPFPATCSGNFNQMDCSNTDEMSNMRSSPSTVFDAWEKLLEDDTSDSYWKELLELTSSNSPISW 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1912 337 CDD SANT 69 112 IPR001005 -
Prci5g1912 337 SMART sant 66 114 IPR001005 -
Prci5g1912 337 SMART sant 13 63 IPR001005 -
Prci5g1912 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci5g1912 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci5g1912 337 CDD SANT 16 61 IPR001005 -
Prci5g1912 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci5g1912 337 Gene3D - 69 116 - -
Prci5g1912 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci5g1912 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 65 IPR017930 -
Prci5g1912 337 Gene3D - 14 66 - -
Prci5g1912 337 FunFam MYB-related transcription factor 13 66 - -
Prci5g1912 337 PANTHER F14D16.11-RELATED 1 315 - -
Prci5g1912 337 FunFam Transcription factor MYB39 69 130 - -
Prci5g1912 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci5g1912 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1912 Prci-Chr5 37155921 37157493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1912 1 327 MYB Transcription Factor Family AT5G16770 44.857 4.88e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1912 Myb_DNA-binding 2.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1912 K09422 - gmx:778082 369.392