Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1911 ATGGTTAGGCCACCGTGTTGTTGTGAGGAGACTGGTATGAAGAGAGGGCCATGGACGCCTGAAGAAGATGAGAAGCTTATTGATTATATCAGCAAACATGGCAGCGGAAATTGGAAATCAGTTCCAAAGCATGCGGGCCTCAACAGATGCGGCAAGAGCTGCAGGCTACGCTGGACAAACTATCTCAGGCCTGACATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGCGATTGATCATCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAACGAGATAAAGAATTTCTGGAACACCAGTATAAGAAAGAAGCTTCTTCAGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCATCTCATGAATCTCTCGCAGTTGCTTGGCATAGCTAATAACAATAACTTGACGAGCCCTGGGAGCCACGCTGGTCTAGGTTTACAACTACATGATTTGACTCATCAGTTATCCCAAATCCAACTGCTGCAGAATCTGTTGCAGCTTATGAATGGCAGTAACATGCAGATTATTCTCCCACTTTTGGGCAACAACCCTCTGGAAGCATGTATAAATGGTTCAAATAGCACTCTCACTCTCCCCAACAACAAAGAGGCTCTCTTGAGAGGCCATGAATTATGCGCAAGCCCAGATTTATTTCCTTCAGCTCCAAGTGACTCACGCCAGGATATTTCAGAATCATGGACAAACCCGGAAGGAGCATCAAATCAAGAAGCTTTTGTTGATACCAATAGTAGCGATAGAAGAACTTCTTCATCACATGAAACGAATCAAGCTGAAAATCCATGTCCTGCAACTGGTTCAGCCAACTTCAACCAAATGGAGAGATCCAATACTGATGAAATGTCCGACCTGCAGTCATCCACAGTCTTTGATGCTTGGGAGAAACTCTTGGAAGATGATCCGAGTGACGATTCCTATTGGAGAGAACTTTTCAATTTGACGTCCACTTCTGCGTCGCAGATTTCGTGGTAG 1038 0.4489 MVRPPCCCEETGMKRGPWTPEEDEKLIDYISKHGSGNWKSVPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTSIRKKLLQMGIDPETHKPRTDLKHLMNLSQLLGIANNNNLTSPGSHAGLGLQLHDLTHQLSQIQLLQNLLQLMNGSNMQIILPLLGNNPLEACINGSNSTLTLPNNKEALLRGHELCASPDLFPSAPSDSRQDISESWTNPEGASNQEAFVDTNSSDRRTSSSHETNQAENPCPATGSANFNQMERSNTDEMSDLQSSTVFDAWEKLLEDDPSDDSYWRELFNLTSTSASQISW 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1911 345 CDD SANT 70 111 IPR001005 -
Prci5g1911 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci5g1911 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci5g1911 345 MobiDBLite consensus disorder prediction 233 293 - -
Prci5g1911 345 MobiDBLite consensus disorder prediction 236 293 - -
Prci5g1911 345 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Prci5g1911 345 Gene3D - 14 67 - -
Prci5g1911 345 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Prci5g1911 345 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Prci5g1911 345 Gene3D - 70 117 - -
Prci5g1911 345 FunFam MYB-related transcription factor 14 67 - -
Prci5g1911 345 SMART sant 14 64 IPR001005 -
Prci5g1911 345 SMART sant 67 115 IPR001005 -
Prci5g1911 345 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Prci5g1911 345 PANTHER F14D16.11-RELATED 1 321 - -
Prci5g1911 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Prci5g1911 345 FunFam Transcription factor MYB39 70 131 - -
Prci5g1911 345 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1911 Prci-Chr5 37150131 37151670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1911 1 188 MYB Transcription Factor Family AT5G16770 64.021 2.57e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1911 Myb_DNA-binding 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1911 K09422 - gmx:778082 368.622