Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1910 ATGGGTAGGCCGCCATGTTGTGAGGAGACTAGTGTGAAGAAAGGGCCTTGGACGCCTGAAGAAGATGAGAAGCTTTTTAAATATATCAGCAAACATGGCAGTGGAAGTTGGAGATCAGTTCCAAAGCATGCAGGCCTCAACAGATGTGGCAAGAGCTGCAGGCTACGCTGGACAAACTATCTTAGACCAGACATCAAGAGAGGCAACTTCACGGAAGAAGAGGAGCGATTGATCGTCAACCTTCATTCTGTTCTTGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAATGAGATAAAGAATTTCTGGAACACCAATCTGAGGAAGAAGCTTCTCCGGATGGGTATTGACCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCACCTCATGAATCTCTCGCAGCTTCTAGGCATGGCTAATAATAACTTGATGGGCCCTTGGAGCCGTGAGGGTCTGGGTTTACACCAACCGGATTTGACTCATCAGTTATCCCAAATCCAACTCCTGCAGAACCTGTTTCAGCTATTGAATGGCAGTAGCTTGCAGAGTATTCTCCCACTCTTGGGTAATCAAAGTTTGACCAATAACCCAATTATGGAAGCAAGTGTAAATGTTGCAAACAGCACTCTTCCGAATAACAAAGAGTCTTTCTCGGGAGACCAAGAATTATATGCAAGCACTGCTCTATTTCCTCCACCACCTAGTGAATCACGCCAGGATGTTTCAGAATCATGGACAGACCCAGAAGGAGCATCGGATCAAGAAGTTTTGGGTATTGATAATAGTACTAGCAGAATTTCATCACATGAAATAAGGGGAGCAGAAAACCCACTCCCTACGAATGATTCAACCACTTTCAATCAAATGGAGAGCAGCCCCAATAATAACACAGATGAAATGTCAACCCAATCATCTCCACCTACAATCTTTGACGATGCTAATTGGGAGAAGCTCTTGGAAGATGACATAAACGATTCCTTCTGGAAAGAACTCTTAGACTTGACGTCCACTTCCACATCGCCCATTTCGTGGTAG 1053 0.4492 MGRPPCCEETSVKKGPWTPEEDEKLFKYISKHGSGSWRSVPKHAGLNRCGKSCRLRWTNYLRPDIKRGNFTEEEERLIVNLHSVLGNKWSKIATHLPGRTDNEIKNFWNTNLRKKLLRMGIDPETHKPRTDLKHLMNLSQLLGMANNNLMGPWSREGLGLHQPDLTHQLSQIQLLQNLFQLLNGSSLQSILPLLGNQSLTNNPIMEASVNVANSTLPNNKESFSGDQELYASTALFPPPPSESRQDVSESWTDPEGASDQEVLGIDNSTSRISSHEIRGAENPLPTNDSTTFNQMESSPNNNTDEMSTQSSPPTIFDDANWEKLLEDDINDSFWKELLDLTSTSTSPISW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1910 350 CDD SANT 69 112 IPR001005 -
Prci5g1910 350 Gene3D - 69 116 - -
Prci5g1910 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci5g1910 350 FunFam Transcription factor MYB39 69 130 - -
Prci5g1910 350 CDD SANT 16 61 IPR001005 -
Prci5g1910 350 MobiDBLite consensus disorder prediction 232 316 - -
Prci5g1910 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci5g1910 350 MobiDBLite consensus disorder prediction 262 276 - -
Prci5g1910 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci5g1910 350 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci5g1910 350 SMART sant 13 63 IPR001005 -
Prci5g1910 350 SMART sant 66 114 IPR001005 -
Prci5g1910 350 FunFam MYB-related transcription factor 13 66 - -
Prci5g1910 350 MobiDBLite consensus disorder prediction 283 316 - -
Prci5g1910 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 61 IPR017930 -
Prci5g1910 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci5g1910 350 Gene3D - 13 66 - -
Prci5g1910 350 PANTHER F14D16.11-RELATED 1 318 - -
Prci5g1910 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1910 Prci-Chr5 37143445 37145102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1910 1 339 MYB Transcription Factor Family AT5G16770 44.413 1.25e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g1910 Myb_DNA-binding 3.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1910 K09422 - gmx:778082 370.548