Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1907 ATGGCTTCTCTTGGGAACCCCAGAAGTTGGGTTCCATACATGAACAATAAAGACTGTTCTCAAGGCTTCTGCAGTCTGTACTGTCCACAATGGTGTTACATAGTGTATCCTCCTCCTCCTCCCTTTGAATTACCTGAAGATAATTCAAGCCCTAATTTTTCACCTCTGGTTATAGCAGTCATTGGAATCTTGGCCAGTGCTCTTCTTCTTGTCAGCTACTACACCATAATATCCAGGTACTGCGGCAACCCAGAATTTTCGGATCGACAGAATCACGATCCTTCAAATGGTGAATTGGGACACTTTCACGACCCTTCCCTTCACGAGCCATGGCACGCGTCACCCAATGGTCTAGACGAGGCTCTGATCAAGACCATCACAGTTTGTAAGTACAAGAAAGAAGATGGGTTGGTGAGTGTAGCAGATTGCTCTGTTTGTCTCACCGAGTTCAAAGACGATGACAGCATCAGGCTCTTGCCTAAGTGCAGCCATGCTTTTCACATCCCTTGCATTGACACGTGGCTCAAATCTCACTCCTCTTGTCCTCTCTGTCGTGCTAGTATCTTCGCCTTCAACGCTTCAGCTCTTCCGGTGTCTGATTCCGTCATGGAGAATTCAACTTCCCAGGAAAATCAACCTGGGAATGAAAACAATGAAGTGGTGGGTTTAGCAGTAGAAGAAGAAAATGAAGAAACCTTACAACGTAGTACAGCTCCGAAGCCTACATTGCGTGCCTTGAGTGATTTGGGGAATTTGCAGGGAAGGCATAGTGTGATTGAGATTAAAGATGAAGGGTACATCGAGCCCTTTAGAAGGTCAGTTTCTATGGACCATTCATTTCAAAGTGGTAACCATGTTGAAGAAGGCTCTGTCAATGAAGCAGGTCCATCAAAGAGATCTCAAGGAGAAAGCAGCAAATCTAACAACAGAAGAAGGGTATTGCAGTGTGTATTGAGTCCCATTGTAATGAAGAGATCGTTTTCAAGTGGAAGATTCTCTATCAGCAGAGGAAGGCAAGGGATAATCCCTATCTGA 1035 0.4502 MASLGNPRSWVPYMNNKDCSQGFCSLYCPQWCYIVYPPPPPFELPEDNSSPNFSPLVIAVIGILASALLLVSYYTIISRYCGNPEFSDRQNHDPSNGELGHFHDPSLHEPWHASPNGLDEALIKTITVCKYKKEDGLVSVADCSVCLTEFKDDDSIRLLPKCSHAFHIPCIDTWLKSHSSCPLCRASIFAFNASALPVSDSVMENSTSQENQPGNENNEVVGLAVEEENEETLQRSTAPKPTLRALSDLGNLQGRHSVIEIKDEGYIEPFRRSVSMDHSFQSGNHVEEGSVNEAGPSKRSQGESSKSNNRRRVLQCVLSPIVMKRSFSSGRFSISRGRQGIIPI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1907 344 CDD RING-H2_EL5-like 142 185 - -
Prci5g1907 344 SMART ring_2 143 184 IPR001841 -
Prci5g1907 344 Pfam Ring finger domain 142 185 IPR001841 -
Prci5g1907 344 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Prci5g1907 344 MobiDBLite consensus disorder prediction 280 310 - -
Prci5g1907 344 SUPERFAMILY RING/U-box 128 190 - -
Prci5g1907 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Prci5g1907 344 PANTHER RING-H2 FINGER PROTEIN ATL16 41 313 IPR044600 GO:0016567|GO:0016740
Prci5g1907 344 FunFam RING-H2 finger protein ATL54 118 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1907 Prci-Chr5 37101852 37104003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1907 1 241 C3H Transcription Factor Family AT3G03550 44.944 2.05e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1907 - - gmx:100792267 477.248