Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1896 ATGGCGTCCGAAAGCTTCACCGACAAGAACGTCGTCTTCAGAAAACTGAAGGCGAAGTCCGATAATAAGATGTGTTTCGATTGTAATGCAAAGAATTCAACTTGGGCGTCCGTCACTTATGGGATTTTTCTCTGCATCGATTGCTCGGCTGTTCATCGCAGTCTTGGTGTCCACATAAGTTTTGTGAGATCTACGAATTTGGATTCATGGACCCCTGAGCAACTGAAAATGATGAGCTTTGGAGGAAATAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACAGACGGTGGTAAAATAGAGGCCAAGTATACATCTAGAGCTGCAGAGTTGTATAGACAGATTCTTTCAAAGGAAGTTGCTAAAAGCATGGCCGAGGAGGCTGGTTTGCCAACATCACCTCTTGCTTCTCAGCCTGCACAAATTTCTAAAGGACCTCCCGAGGTTAGAACGAAGGAAGAACCAAACGAGAACACTGTACGGAAGCCAGAAATGCCTGAAAGTTCTGCATCACCTAGAGCTTCGCATACAATCTTTTCTTCTTCTGTAAAGAAGACTATTGGTGCAAAAAAGCCAGGGAAGAGTGGGGGTCTTGGTGCCCGGAAACTTACTAAAAGGCCAAGTGAGTCTCTCTATGAGCAGAAGCCGGAAGACCCACCTGCTCCAGTTTCTTCCTCAACAAATAGCAGTTTGCTTGCTGGGCCACCCCTGACATCTCGGTTTGAGTATGCTGATGATGTCCAGTCTTCTGATTCAAACTCTGGAGGGTCACATCTAATTAGTCATGTGGCTCCACCAAAGTCATCAAGCTTCTTTGCAGATTTTGGAATGGATAGTGGTTTTCCAAAGAATTACGGATCAAATTCCTCAAAAGTGCAAGTTGAAGAATCTGATGAAGCGAGAAGGAAGTTCTCAAATGCTAAATCTATTTCTTCAGCCCAATTTTTTGGGGATCCGAGCAGAGGCACAGATGTGGATGCTCAAATTACTTTGTCGAAATTTTCAGGTTCAGCTGCCATCTCCAGTGCTGATCTTTTTGGCCACTCGGATGACAAATCCTCCATTGATCTTACTGCTAATGACCTCTTAAATCGACTGTCCTTCCAGGCTCAGCAGGATATATCTAACATTAAAAATATTGCTGGAGAGACTGGAAAGAAGCTCAGCTCCCTGGCCTCCAATTTGTTGACGGATCTTCAGGACAGAATTCTGTAA 1218 0.4433 MASESFTDKNVVFRKLKAKSDNKMCFDCNAKNSTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEAGLPTSPLASQPAQISKGPPEVRTKEEPNENTVRKPEMPESSASPRASHTIFSSSVKKTIGAKKPGKSGGLGARKLTKRPSESLYEQKPEDPPAPVSSSTNSSLLAGPPLTSRFEYADDVQSSDSNSGGSHLISHVAPPKSSSFFADFGMDSGFPKNYGSNSSKVQVEESDEARRKFSNAKSISSAQFFGDPSRGTDVDAQITLSKFSGSAAISSADLFGHSDDKSSIDLTANDLLNRLSFQAQQDISNIKNIAGETGKKLSSLASNLLTDLQDRIL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1896 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Prci5g1896 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Prci5g1896 405 MobiDBLite consensus disorder prediction 163 185 - -
Prci5g1896 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Prci5g1896 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Prci5g1896 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Prci5g1896 405 MobiDBLite consensus disorder prediction 285 306 - -
Prci5g1896 405 MobiDBLite consensus disorder prediction 128 262 - -
Prci5g1896 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Prci5g1896 405 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Prci5g1896 405 MobiDBLite consensus disorder prediction 148 162 - -
Prci5g1896 405 MobiDBLite consensus disorder prediction 244 260 - -
Prci5g1896 405 Pfam Putative GTPase activating protein for Arf 12 106 IPR001164 GO:0005096
Prci5g1896 405 MobiDBLite consensus disorder prediction 221 236 - -
Prci5g1896 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Prci5g1896 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Prci5g1896 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1896 Prci-Chr5 36967711 36971467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1896 13 91 C2H2 Transcription Factor Family AT4G21160 45.000 1.06e-18 84.7