Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1894 ATGAATCTTTGGTCCGACGAAAACTCCTCCGTCATGGACGCATTCACAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCCTCTACTTCTACGATTACCACCACTGAAACTGACCCCACCAAAGCTTTCTCTCAAAACCAGCTTTCGGCTTGCATCTTCAATCAGGAGACTCTTCAACAGCGTCTCCAGGCGCTGATTGAAAAGGCCAGTGAGAGCTGGACCTACGCTATCTTCTGGCAATCTTCTTGTGATTACTCGGGAACCTCCGTGTTGGGTTGGGGGGATGGGTACTACAAAGGCGAGGAGGATAAAGGAAAGGGGAAGGCCAAAATGACGGCATCTTCCGCGGCCGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTTAATTCGCTAATCTCCGGCTCGTCGTCCTTCCCGGATGACGCTGTGGACGAAGAAGTAACGGATACCGAGTGGTTCTTTTTGGTTTCGATGACCCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAATTCGAGCCCGGTGTGGGTCGCTGGTTCCGAGCGGTTGGCGGCTTCGACGTGCGAGAGGGCGAGGCAGGGTCAGTTGTTCGGGCTTCAGACTTTGGTTTGTGTACCGTCGGCGAGTGGAGTGGTCGAACTGGGCTCAACGGAGCTGATATTCCAAAACTCTGATCTGATGAATATGGTCAGGGATTTGTTCAATTTCAATAACGCCGAGGGGAATTCTTTGTGGCCGTCAAATGCTTCAACTGCTGCCGATCAGGGTGAGAACGACCCTTCGTCACTCTGGCTCAACGATCCTTCTACAGTTGAAATTAGGGATTCGGTGACTACTGTTCCCCCCATTTCTGTGCCTAGTTCTAGCAACAGCCATAATAACAATCCGAAGCCGATGCAATTGGATACTAGAGGTTCCGCAACTTTAGCCGAGACTCCAAGTTCCATTCATATCCCAAACGCTCACCATAGTCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTTCTTTTCCCGGGAATTCAACTTTTCGGACTATGGATTAGACGGAGACGGTGTGAAGAACGGTAACTCGCATTCCTTGAAGCCCGAATCGGGTGAGGTTTTGAATTTCGGGGAGAGCAAGAGAAACGCTTATAATGGAAACGGGAATTTCCTTTCAGGTCAATCTCAACTCAATGCTGAGGAGAAGAAGAGGAGGTCACCTACGTCCAGGGGGAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTGATTTTGCCTGCATCAAATACGAAGACCGGCGGCGGCGGTGATTCTGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGATAGTAAAGTGGTAGAACCAGAGAAAAAACCTCGGAAGAGAGGACGAAAACCTGCAAATGGCAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAATCAACGGTTCTACGCGCTTCGTGCCGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATTTCTTACATCACTGAGCTCAAGTCGAAGCTTCAGAGACTAGAATCAGACAAGAACGAATTGCAGAACCAATTGGATTCTGTCAAGAAGGAGCTCGAGGTAGCCCACAAAGGCTCAGCGCCACCTCCACCGGATAAAGAACCGAAGCCGTCCAATCATCATGCAAGCAAGATCACGGATTTGGATATCGACGTGAAGATTATCGGTTGGGATGCGATGATTCGGATTCAGTGCAGCAGGAAGAATCACCCAGCGGCAAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGACGTGAACCACGCGAGTGTGTCGGTGATGAATGATTTGATGATCCAACAAGCAACAGTGAGGATGGGCAGTCAATTCTACACGCAGGAGCAACTCCGTTTAGCGCTTTCGTCCAAAGTTGGCGATGTCCGATAG 1995 0.5053 MNLWSDENSSVMDAFTGSDLSSLWPPQQSSTSTITTTETDPTKAFSQNQLSACIFNQETLQQRLQALIEKASESWTYAIFWQSSCDYSGTSVLGWGDGYYKGEEDKGKGKAKMTASSAAEQEHRKKVLRELNSLISGSSSFPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSERLAASTCERARQGQLFGLQTLVCVPSASGVVELGSTELIFQNSDLMNMVRDLFNFNNAEGNSLWPSNASTAADQGENDPSSLWLNDPSTVEIRDSVTTVPPISVPSSSNSHNNNPKPMQLDTRGSATLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGFFSREFNFSDYGLDGDGVKNGNSHSLKPESGEVLNFGESKRNAYNGNGNFLSGQSQLNAEEKKRRSPTSRGSNDEGMLSFTSGVILPASNTKTGGGGDSDHSDLEASVIKEVDSKVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQRLESDKNELQNQLDSVKKELEVAHKGSAPPPPDKEPKPSNHHASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDVR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1894 664 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 551 IPR036638 GO:0046983
Prci5g1894 664 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
Prci5g1894 664 MobiDBLite consensus disorder prediction 449 491 - -
Prci5g1894 664 SMART finulus 487 536 IPR011598 GO:0046983
Prci5g1894 664 Coils Coil 527 561 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 385 491 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 286 315 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 17 40 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 417 443 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 386 403 - -
Prci5g1894 664 PANTHER MYC 46 659 IPR045084 GO:0003700|GO:0006355
Prci5g1894 664 CDD bHLH_AtAIB_like 478 554 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 254 274 - -
Prci5g1894 664 MobiDBLite consensus disorder prediction 558 579 - -
Prci5g1894 664 Gene3D - 473 561 IPR036638 GO:0046983
Prci5g1894 664 Pfam Helix-loop-helix DNA-binding domain 485 530 IPR011598 GO:0046983
Prci5g1894 664 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Prci5g1894 664 FunFam Transcription factor bHLH13 474 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1894 Prci-Chr5 36931413 36933878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1894 1 661 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.519 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1894 bHLH-MYC_N 1.2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1894 K13422 - vvi:100250607 843.958