Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1893 ATGAATCTTTGGTCCGACGAAAACTCCTCCGTCATGGACGCATTCACAGGCTCCGATCTATCTTCTCTCTGGCCTCCTCAGCAATCCTCTACTTCTACGATTACCACCACTGAAACTGACCCCACCAAAGCTTTCTCTCAAAACCAGCTTTCGGCTTGCATCTTCAATCAGGAGACTCTTCAACAGCGTCTCCAGGCGCTGATTGAAAAGGCCAGTGAGAGCTGGACCTACGCTATCTTCTGGCAATCTTCTTGTGATTACTCGGGAACCTCCGTGTTGGGTTGGGGGGATGGGTACTACAAAGGCGAGGAGGATAAAGGAAAGGGGAAGGCCAAAATGACGGCATCTTCCGCGGCCGAGCAGGAGCACCGGAAGAAGGTTCTTCGCGAGCTTAATTCGCTAATCTCCGGCTCGTCGTCCTTCCCGGATGACGCTGTGGACGAAGAAGTAACGGATACCGAGTGGTTCTTTTTGGTTTCGATGACCCAGTCGTTTTACAACGGCGGCGGATTGCCGGGGCAGGCGTTCCTCAATTCGAGCCCGGTGTGGGTCGCTGGTTCCGAGCGGTTGGCGGCTTCGACGTGCGAGAGGGCGAGGCAGGGTCAGTTGTTCGGGCTTCAGACTTTGGTTTGTGTACCGTCGGCGAGTGGAGTGGTCGAACTGGGCTCAACGGAGCTGATATTCCAAAACTCTGATCTGATGAATATGGTCAGGGATTTGTTCAATTTCAATAACGCCGAGGGGAATTCTTTGTGGCCGTCAAATGCTTCAACTGCTGCCGATCAGGGTGAGAACGACCCTTCGTCACTCTGGCTCAACGATCCTTCTACAGTTGAAATTAGGGATTCGGTGACTACTGTTCCCCCCATTTCTGTGCCTAGTTCTAGCAACAGCCATAATAACAATCCGAAGCCGATGCAATTGGATACTAGAGGTTCCGCAACTTTAGCCGAGACTCCAAGTTCCATTCATATCCCAAACGCTCACCATAGTCACCAACAACAACGGCAACAGCAGCGTCATTCGCTGAACCAGGGTTTCTTTTCCCGGGAATTCAACTTTTCGGACTATGGATTAGACGGAGACGGTGTGAAGAACGGTCAATCTCAACTCAATGCTGAGGAGAAGAAGAGGAGGTCACCTACGTCCAGGGGGAGCAATGACGAAGGCATGCTTTCTTTCACTTCAGGTGTGATTTTGCCTGCATCAAATACGAAGACCGGCGGCGGCGGTGATTCTGATCATTCCGATCTCGAAGCTTCTGTGATTAAGGAGGTAGATAGTAAAGTGGTAGAACCAGAGAAAAAACCTCGGAAGAGAGGACGAAAACCTGCAAATGGCAGAGAGGAGCCTCTGAATCATGTTGAAGCTGAAAGGCAGAGGAGAGAGAAGCTCAATCAACGGTTCTACGCGCTTCGTGCCGTGGTTCCAAACGTTTCAAAGATGGATAAAGCATCCCTTCTGGGTGATGCCATTTCTTACATCACTGAGCTCAAGTCGAAGCTTCAGAGACTAGAATCAGACAAGAACGAATTGCAGAACCAATTGGATTCTGTCAAGAAGGAGCTCGAGGTAGCCCACAAAGGCTCAGCGCCACCTCCACCGGATAAAGAACCGAAGCCGTCCAATCATCATGCAAGCAAGATCACGGATTTGGATATCGACGTGAAGATTATCGGTTGGGATGCGATGATTCGGATTCAGTGCAGCAGGAAGAATCACCCAGCGGCAAGGTTGATGGCAGCATTGAAGGAGCTAGACCTGGACGTGAACCACGCGAGTGTGTCGGTGATGAATGATTTGATGATCCAACAAGCAACAGTGAGGATGGGCAGTCAATTCTACACGCAGGAGCAACTCCGTTTAGCGCTTTCGTCCAAAGTTGGCGATGTCCGATAG 1899 0.5076 MNLWSDENSSVMDAFTGSDLSSLWPPQQSSTSTITTTETDPTKAFSQNQLSACIFNQETLQQRLQALIEKASESWTYAIFWQSSCDYSGTSVLGWGDGYYKGEEDKGKGKAKMTASSAAEQEHRKKVLRELNSLISGSSSFPDDAVDEEVTDTEWFFLVSMTQSFYNGGGLPGQAFLNSSPVWVAGSERLAASTCERARQGQLFGLQTLVCVPSASGVVELGSTELIFQNSDLMNMVRDLFNFNNAEGNSLWPSNASTAADQGENDPSSLWLNDPSTVEIRDSVTTVPPISVPSSSNSHNNNPKPMQLDTRGSATLAETPSSIHIPNAHHSHQQQRQQQRHSLNQGFFSREFNFSDYGLDGDGVKNGQSQLNAEEKKRRSPTSRGSNDEGMLSFTSGVILPASNTKTGGGGDSDHSDLEASVIKEVDSKVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQRLESDKNELQNQLDSVKKELEVAHKGSAPPPPDKEPKPSNHHASKITDLDIDVKIIGWDAMIRIQCSRKNHPAARLMAALKELDLDVNHASVSVMNDLMIQQATVRMGSQFYTQEQLRLALSSKVGDVR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1893 632 MobiDBLite consensus disorder prediction 417 459 - -
Prci5g1893 632 Gene3D - 441 529 IPR036638 GO:0046983
Prci5g1893 632 MobiDBLite consensus disorder prediction 359 459 - -
Prci5g1893 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 449 498 IPR011598 GO:0046983
Prci5g1893 632 FunFam Transcription factor bHLH13 442 516 - -
Prci5g1893 632 SMART finulus 455 504 IPR011598 GO:0046983
Prci5g1893 632 MobiDBLite consensus disorder prediction 286 315 - -
Prci5g1893 632 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 241 IPR025610 -
Prci5g1893 632 MobiDBLite consensus disorder prediction 17 40 - -
Prci5g1893 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 452 519 IPR036638 GO:0046983
Prci5g1893 632 MobiDBLite consensus disorder prediction 526 547 - -
Prci5g1893 632 MobiDBLite consensus disorder prediction 254 274 - -
Prci5g1893 632 MobiDBLite consensus disorder prediction 385 411 - -
Prci5g1893 632 CDD bHLH_AtAIB_like 446 522 - -
Prci5g1893 632 Coils Coil 495 529 - -
Prci5g1893 632 PANTHER MYC 46 627 IPR045084 GO:0003700|GO:0006355
Prci5g1893 632 Pfam Helix-loop-helix DNA-binding domain 453 498 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1893 Prci-Chr5 36931413 36933878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1893 2 631 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 54.743 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g1893 bHLH-MYC_N 1.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g1893 K13422 - vvi:100250607 780.4