Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g1881 ATGGTTCGAAGTTGGAGCCTAATGTCTTCGCCAGTTCTGACTGCTCAAGAGGAAGGGGAGAACAACACGTCAACAGTAACTTCTTCACGATCCTTGGATCTTACCTCCCAAAATGCAACTGGATTAAAAGAGCGCAATTACCTAGGGTTATCAGATTGCTCATCAGTGGAGAGCTCTACTGTTCCAAGCGACTCTGATGAGAAAAGGGACAATCTAAATTTGAAGGCTACGGAATTGAGGTTGGGTCTTCCAGGATCCCAATCACCTGAAAGGAATGATAGCTCGACAAAACTTAATGAGAAGCCACTGTTTCCTTTGCTTCCAACAAAAGATGGAATCTGCTCATTGTCCCAGAAAATCGTGGTTACAGGCAACAAAAGGGGATTCTCTGACACCGTGGATAGGTTCCCTGAGATGAAGTTTCCCGGGAATTCAGGGGTAAATGTGCTGCTTTCTCCTAGATCTGCTAGAGCTCAGCCAACAACAACAAAAGAAATGCCGACTAAGGTATTGCGAGAACGGCCTTGTGCAACTAATGGAACAGGCCATAACAAAACGGATGCTTCTATTGTTGGCAGTGCTCCTGCCTCTAAGGCACAGGTTGTTGGTTGGCCTCCAATAAGGTCATTTAGGAAGAACTCGTTGTCTGTCACTTCAAAGAACAATGATGAAGTAGATGGAAAACCGGCTCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGAGCTCCCTATCTAAGGAAGGTTGATCTGAGGAGTTACAACACATACCAGGATCTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTATCCTAGGTCAATGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGGGATGTACCATGGGAGATGTTTATTGACACATGCAAGAGGCTGAAAATCATGAAAGGATCTGATGCCATTGGCTTAGCTCCCAGGGCTATGGAGAAATCCAAGAGAAGGAGCTAG 1062 0.4557 MVRSWSLMSSPVLTAQEEGENNTSTVTSSRSLDLTSQNATGLKERNYLGLSDCSSVESSTVPSDSDEKRDNLNLKATELRLGLPGSQSPERNDSSTKLNEKPLFPLLPTKDGICSLSQKIVVTGNKRGFSDTVDRFPEMKFPGNSGVNVLLSPRSARAQPTTTKEMPTKVLRERPCATNGTGHNKTDASIVGSAPASKAQVVGWPPIRSFRKNSLSVTSKNNDEVDGKPAPAALFVKVSMDGAPYLRKVDLRSYNTYQDLSSALEKMFSCFILGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKRRS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g1881 353 FunFam Auxin-responsive protein 228 345 - -
Prci5g1881 353 MobiDBLite consensus disorder prediction 1 38 - -
Prci5g1881 353 ProSiteProfiles PB1 domain profile. 233 337 IPR000270 GO:0005515
Prci5g1881 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 72 340 IPR003311 GO:0005634|GO:0006355
Prci5g1881 353 Gene3D - 230 346 - -
Prci5g1881 353 MobiDBLite consensus disorder prediction 53 103 - -
Prci5g1881 353 SUPERFAMILY CAD & PB1 domains 230 334 - -
Prci5g1881 353 Pfam AUX/IAA family 77 344 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g1881 Prci-Chr5 36809825 36814359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g1881 237 343 B3 DNA Binding Superfamily AT4G23980 29.907 7.50e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci5g1881 AUX_IAA 1.3e-89 CL0072